Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OM992_RS11700 Genome accession   NZ_CP110268
Coordinates   2257171..2257779 (+) Length   202 a.a.
NCBI ID   WP_029575375.1    Uniprot ID   A0AAE2TI94
Organism   Bacillus siamensis strain YB-1631     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2252171..2262779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS11660 (OM992_11660) - 2253192..2253698 (-) 507 WP_016939058.1 PTS glucose transporter subunit IIA -
  OM992_RS11665 (OM992_11665) - 2253836..2254249 (+) 414 WP_045927220.1 Hsp20/alpha crystallin family protein -
  OM992_RS11670 (OM992_11670) - 2254279..2254752 (-) 474 WP_064779092.1 YppG family protein -
  OM992_RS11675 (OM992_11675) - 2254940..2255122 (+) 183 WP_003153532.1 YppF family protein -
  OM992_RS11680 (OM992_11680) - 2255160..2255528 (-) 369 WP_264818748.1 YppE family protein -
  OM992_RS11685 (OM992_11685) - 2255574..2255819 (-) 246 WP_064779090.1 DUF5446 family protein -
  OM992_RS11690 (OM992_11690) sspM 2256024..2256128 (+) 105 WP_016939063.1 acid-soluble spore protein SspM -
  OM992_RS11695 (OM992_11695) - 2256167..2257129 (-) 963 WP_064779089.1 DUF2515 domain-containing protein -
  OM992_RS11700 (OM992_11700) recU 2257171..2257779 (+) 609 WP_029575375.1 Holliday junction resolvase RecU Machinery gene
  OM992_RS11705 (OM992_11705) - 2257818..2260598 (+) 2781 WP_264818749.1 PBP1A family penicillin-binding protein -
  OM992_RS11710 (OM992_11710) - 2260677..2261168 (-) 492 WP_064779087.1 YpoC family protein -
  OM992_RS11715 (OM992_11715) nth 2261165..2261824 (-) 660 WP_016939068.1 endonuclease III -
  OM992_RS11720 (OM992_11720) dnaD 2261843..2262541 (-) 699 WP_016939069.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=753664 OM992_RS11700 WP_029575375.1 2257171..2257779(+) (recU) [Bacillus siamensis strain YB-1631]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFEKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQGQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=753664 OM992_RS11700 WP_029575375.1 2257171..2257779(+) (recU) [Bacillus siamensis strain YB-1631]
GTGATTCGGTATCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCGGTCA
TTCACAAGAAGCCGACACCCGTCCAGATTGTAAACGTCCATTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAGGCTTAT
TTTAAGCAGTCTTCGACAACCGATTACAATGGGATTTATAAAGGGCGCTACATTGATTTCGAAGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGACCATCAAATTGAGCACATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGAAAAGGTTTATTTCCTCGAGGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAACGGCAGAAAGTCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGGACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891