Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   OM992_RS09175 Genome accession   NZ_CP110268
Coordinates   1800244..1800615 (+) Length   123 a.a.
NCBI ID   WP_231937532.1    Uniprot ID   -
Organism   Bacillus siamensis strain YB-1631     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1795244..1805615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS09170 (OM992_09170) - 1798673..1799884 (-) 1212 WP_064779007.1 cytochrome P450 -
  OM992_RS09175 (OM992_09175) nucA/comI 1800244..1800615 (+) 372 WP_231937532.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  OM992_RS09180 (OM992_09180) - 1800676..1801431 (+) 756 WP_064778940.1 YoaK family protein -
  OM992_RS09185 (OM992_09185) - 1801466..1801828 (-) 363 WP_016936035.1 hypothetical protein -
  OM992_RS09190 (OM992_09190) - 1802011..1803339 (-) 1329 WP_264820159.1 S8 family peptidase -
  OM992_RS09195 (OM992_09195) - 1803504..1803737 (+) 234 WP_016936033.1 hypothetical protein -
  OM992_RS09200 (OM992_09200) - 1803992..1804699 (+) 708 WP_045926688.1 poly-gamma-glutamate hydrolase family protein -
  OM992_RS09205 (OM992_09205) - 1804760..1805212 (+) 453 WP_264820160.1 OsmC family protein -
  OM992_RS09210 (OM992_09210) - 1805226..1805579 (-) 354 WP_049628516.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13395.87 Da        Isoelectric Point: 6.7105

>NTDB_id=753663 OM992_RS09175 WP_231937532.1 1800244..1800615(+) (nucA/comI) [Bacillus siamensis strain YB-1631]
MSAGTHSENTARAASRYDQVLYFPLLKYPETGNHIKDAISAGHSDICTIDRGGAEDRRKESLKGIPTKPGFDRDEWPMAV
CTEGGAGADIRYVTPSDNRGAGSWVGNQMSRYSDGTKVLFIVQ

Nucleotide


Download         Length: 372 bp        

>NTDB_id=753663 OM992_RS09175 WP_231937532.1 1800244..1800615(+) (nucA/comI) [Bacillus siamensis strain YB-1631]
ATGAGCGCCGGCACTCATTCGGAGAATACTGCCCGAGCCGCGTCCAGATACGATCAGGTGCTTTATTTCCCGCTGTTAAA
ATATCCGGAGACGGGAAATCATATAAAAGACGCCATTTCGGCAGGGCACTCTGACATTTGTACAATTGATCGCGGGGGAG
CTGAGGATAGAAGGAAAGAATCATTGAAAGGAATTCCGACAAAGCCCGGATTTGACCGTGATGAATGGCCGATGGCGGTC
TGTACAGAAGGCGGGGCTGGAGCTGATATCAGATATGTAACCCCTTCGGACAATCGCGGGGCCGGCTCATGGGTCGGAAA
TCAAATGAGCAGGTATTCCGACGGCACGAAAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.963

87.805

0.553