Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   OM992_RS07805 Genome accession   NZ_CP110268
Coordinates   1463698..1463982 (+) Length   94 a.a.
NCBI ID   WP_013352109.1    Uniprot ID   A0AAP7NBF5
Organism   Bacillus siamensis strain YB-1631     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1458698..1468982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS07785 (OM992_07785) - 1459943..1460851 (+) 909 WP_264820081.1 ketopantoate reductase family protein -
  OM992_RS07790 (OM992_07790) - 1460881..1462113 (-) 1233 WP_016936274.1 aminopeptidase -
  OM992_RS07795 (OM992_07795) - 1462214..1462348 (-) 135 WP_016936273.1 protein YkpC -
  OM992_RS07800 (OM992_07800) mreBH 1462420..1463427 (-) 1008 WP_029575211.1 cell shape-determining protein MreBH -
  OM992_RS07805 (OM992_07805) abrB 1463698..1463982 (+) 285 WP_013352109.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  OM992_RS07810 (OM992_07810) - 1464154..1465458 (+) 1305 WP_095240772.1 ATP-binding protein -
  OM992_RS07815 (OM992_07815) - 1465460..1466287 (+) 828 WP_016936270.1 gamma-glutamylcyclotransferase -
  OM992_RS07820 (OM992_07820) ktrC 1466328..1466993 (+) 666 WP_016936269.1 Ktr system potassium transporter KtrC -
  OM992_RS07825 (OM992_07825) ade 1467143..1468876 (+) 1734 WP_264820083.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10542.41 Da        Isoelectric Point: 5.2168

>NTDB_id=753658 OM992_RS07805 WP_013352109.1 1463698..1463982(+) (abrB) [Bacillus siamensis strain YB-1631]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPDNQEYGNGKIILSPEGAK
MLLEEIEEALKDKS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=753658 OM992_RS07805 WP_013352109.1 1463698..1463982(+) (abrB) [Bacillus siamensis strain YB-1631]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTAGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCACTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTTGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAACCGCACGGCATTT
GCTTAATGACCGGAGAAATTACCCCCGACAATCAGGAATACGGCAACGGTAAAATCATCTTAAGCCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAAATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.522

97.872

0.553