Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QE150_RS10255 Genome accession   NZ_CP123993
Coordinates   1998342..1998938 (-) Length   198 a.a.
NCBI ID   WP_000490551.1    Uniprot ID   A0AA36KBA4
Organism   Acinetobacter baumannii strain Ab4294     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1993342..2003938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE150_RS10230 (QE150_10230) - 1993629..1993895 (-) 267 WP_000183704.1 hypothetical protein -
  QE150_RS10235 (QE150_10235) - 1994397..1995521 (-) 1125 WP_000486120.1 HRDC domain-containing protein -
  QE150_RS10240 (QE150_10240) - 1995598..1997202 (-) 1605 WP_130120076.1 IS66 family transposase -
  QE150_RS10245 (QE150_10245) tnpB 1997272..1997607 (-) 336 WP_004691519.1 IS66 family insertion sequence element accessory protein TnpB -
  QE150_RS10250 (QE150_10250) - 1997604..1997987 (-) 384 WP_004762545.1 transposase -
  QE150_RS10255 (QE150_10255) recR 1998342..1998938 (-) 597 WP_000490551.1 recombination mediator RecR Machinery gene
  QE150_RS10260 (QE150_10260) - 1998948..1999277 (-) 330 WP_001024697.1 YbaB/EbfC family nucleoid-associated protein -
  QE150_RS10265 (QE150_10265) - 1999543..1999779 (-) 237 WP_000917295.1 hypothetical protein -
  QE150_RS10270 (QE150_10270) - 1999957..2001144 (-) 1188 WP_262124566.1 O-succinylhomoserine sulfhydrylase -
  QE150_RS10275 (QE150_10275) - 2001278..2002363 (+) 1086 WP_000825836.1 alpha/beta fold hydrolase -
  QE150_RS10280 (QE150_10280) - 2002444..2003211 (-) 768 WP_000934180.1 class I SAM-dependent methyltransferase -
  QE150_RS10285 (QE150_10285) - 2003385..2003759 (-) 375 WP_000800035.1 TonB C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21801.90 Da        Isoelectric Point: 6.1660

>NTDB_id=753656 QE150_RS10255 WP_000490551.1 1998342..1998938(-) (recR) [Acinetobacter baumannii strain Ab4294]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFALAHALHEASSYIHECSVCHSLTEHEICDICASTERDDQL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSQGTIEEVILATNATVEGQATAHYLVEATK
HLPIHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMRMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=753656 QE150_RS10255 WP_000490551.1 1998342..1998938(-) (recR) [Acinetobacter baumannii strain Ab4294]
GTGTTTAGTGATAGATTTGAACAACTCGTTCAAGCTTTACGTATTTTGCCTAGCGTTGGACCGAAGTCGGCCCAACGTAT
GGCTTTACATCTTTTGATGAAAAATCGTGAAGGTGCATTTGCTTTAGCACATGCTCTACATGAAGCATCAAGTTATATTC
ATGAATGTAGTGTTTGCCACTCTTTAACAGAGCATGAAATTTGTGATATTTGCGCTTCAACAGAAAGAGATGATCAATTG
CTTTGTGTAGTTGAGTCTCCGGCAGATGTTATGGCAATCGAGCAAAGTGGTAGTTTTCGTGGCAAATACCATGTGTTGGG
TGGACACCTTTCTCCATTAGATGGAATCGGGCCAGAAGAAATAGGCATTCCTTATCTAATCCAACGTTTAAGCCAAGGTA
CGATCGAAGAAGTCATTTTGGCAACTAATGCTACTGTGGAAGGTCAGGCGACAGCGCATTATTTGGTTGAAGCGACGAAG
CATTTACCTATTCACATGACACGTATTGCTCAAGGCGTACCACAAGGTGGCGAGCTTGAATATGTGGATAGTCATACCTT
AAGTCAGGCTGTTCATAACCGTATGCGTATGAAATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.538

93.939

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

43.523

97.475

0.424