Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   OM992_RS06310 Genome accession   NZ_CP110268
Coordinates   1197434..1199263 (+) Length   609 a.a.
NCBI ID   WP_099745180.1    Uniprot ID   -
Organism   Bacillus siamensis strain YB-1631     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192434..1204263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS06280 (OM992_06280) - 1193096..1193674 (+) 579 WP_045925331.1 GNAT family N-acetyltransferase -
  OM992_RS06285 (OM992_06285) spx 1193853..1194248 (+) 396 WP_003327578.1 transcriptional regulator Spx -
  OM992_RS06290 (OM992_06290) - 1194306..1194962 (-) 657 WP_047477838.1 TerC family protein -
  OM992_RS06300 (OM992_06300) mecA 1195238..1195894 (+) 657 WP_045925332.1 adaptor protein MecA Regulator
  OM992_RS06305 (OM992_06305) - 1196045..1197205 (+) 1161 WP_264819973.1 competence protein CoiA family protein -
  OM992_RS06310 (OM992_06310) pepF 1197434..1199263 (+) 1830 WP_099745180.1 oligoendopeptidase F Regulator
  OM992_RS06315 (OM992_06315) - 1199298..1199465 (-) 168 WP_016938224.1 hypothetical protein -
  OM992_RS06320 (OM992_06320) spxH 1199750..1200652 (-) 903 WP_016938223.1 protease adaptor protein SpxH -
  OM992_RS06325 (OM992_06325) - 1200649..1201047 (-) 399 WP_016938222.1 thiol management oxidoreductase -
  OM992_RS06330 (OM992_06330) - 1201272..1201958 (-) 687 WP_045925335.1 lytic transglycosylase domain-containing protein -
  OM992_RS06335 (OM992_06335) - 1201963..1202538 (-) 576 WP_264819974.1 CYTH domain-containing protein -
  OM992_RS06340 (OM992_06340) - 1202663..1203028 (+) 366 WP_016938219.1 hypothetical protein -
  OM992_RS06345 (OM992_06345) - 1203056..1203691 (+) 636 WP_016938218.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69773.52 Da        Isoelectric Point: 5.4412

>NTDB_id=753653 OM992_RS06310 WP_099745180.1 1197434..1199263(+) (pepF) [Bacillus siamensis strain YB-1631]
MTEENKAAQLPDRSEVKAEHTWRLEDIFPSDEAWNKEFQAVKELIPNLSSFKGTLAHSADNLYAALTAQDEVTSRLGKLY
AYAHMRSDQDTGNSFYQGLNDKAASLYSQAASATAYIEPEILAIQEDKLHQFILEKEELKLYSHAIEEITKQRPHVLSER
EEALLAEASEALSSPSNTFSVLNNADITFPSIKDEDGKETQITHGNFINFLESSDREVRKNAFKAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLIKTINKHLPLLHRYIDLRKKVLGLDEVHIYDLYTPLVKDSGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRSGAYSSGTYGTNPYILMNWHDNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYMLNSLKDEKQRLYLLNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLSKLYYDLNKKYFGDNMVIDKEISLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVERYTEFL
KAGSSEYPIDILKKAGVDMTSPEPIEAACKMFEEKLNEMEELLSKVNPS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=753653 OM992_RS06310 WP_099745180.1 1197434..1199263(+) (pepF) [Bacillus siamensis strain YB-1631]
ATGACTGAGGAAAATAAAGCAGCACAGCTGCCTGACAGAAGTGAAGTAAAGGCAGAGCATACATGGAGACTAGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCGGTTAAAGAATTAATTCCGAATTTATCTTCCTTTAAAGGCA
CGCTTGCTCATTCAGCCGATAATTTATACGCGGCGCTTACCGCACAGGATGAAGTGACGAGCCGTCTGGGGAAACTTTAT
GCATACGCGCATATGCGTTCAGACCAGGATACGGGAAATTCTTTCTACCAAGGGCTGAACGACAAAGCCGCAAGTCTGTA
TTCTCAGGCTGCCAGTGCGACTGCTTATATTGAACCGGAAATTCTGGCGATTCAGGAGGACAAGCTGCATCAGTTTATTC
TGGAAAAAGAAGAGCTGAAGCTTTACTCCCATGCAATTGAAGAAATTACAAAACAGCGTCCGCACGTGCTGAGTGAAAGA
GAAGAGGCCCTGCTTGCGGAAGCGTCAGAAGCGCTGTCTTCGCCTTCCAATACATTCAGTGTGTTAAATAACGCCGATAT
TACGTTTCCGTCAATTAAAGATGAAGACGGCAAGGAAACTCAAATCACACACGGCAACTTTATTAATTTTCTGGAAAGCA
GCGACCGGGAAGTCCGTAAAAACGCCTTTAAAGCCGTATATAAAACATACGGACAGTATAAAAACACGATGGCGACTACA
CTCAGCGGCACTGTGAAAAAAGACAATTTTTACGCCCGCGTGAAAAAATACAAATCAGCACGGGAAGCGGCTTTATCCAA
TAACAGCATCCCTGAAGAAGTTTATGATAACCTGATCAAAACGATCAATAAACATCTTCCGTTATTACACCGCTACATTG
ATCTGCGGAAAAAAGTGCTCGGCCTTGATGAAGTCCATATTTATGACCTGTACACACCGCTTGTAAAAGATTCGGGAATG
AAGGTCACATATGAGGAAGCAAAAGATTATATGCTCAAAGGGCTTGCTCCGTTAGGCGAGGAATACGCGTCTATTTTAAA
AGAAGGACTTGAAAACCGCTGGGTCGATGTATACGAAAACAAAGGAAAACGCAGCGGTGCTTATTCGTCCGGTACATACG
GCACGAATCCGTACATCTTGATGAACTGGCATGACAATGTCAACAACCTGTTTACGCTCGTTCACGAGTTCGGCCATTCC
GTGCACAGCTACTATACGAGAAAATATCAGCCGTATCCGTACGGAAACTACAGCATTTTTGTCGCTGAAGTCGCTTCTAC
GACTAATGAAGCGCTGCTTGGTGAATACATGCTGAACAGCTTAAAAGATGAAAAACAGCGTCTGTACCTGCTCAACCACA
TGCTTGAAGGTTTCAGAGGCACAGTCTTCAGACAGACGATGTTCGCTGAATTTGAGCATCTGATTCATACGAAAGCGCAA
GAAGGCGAGCCGCTGACGCCTGAACTGCTGAGCAAGCTTTATTATGATCTCAATAAAAAGTATTTCGGAGACAACATGGT
GATTGATAAAGAAATCAGCCTGGAATGGTCAAGAATTCCGCATTTCTATTACAATTATTATGTGTATCAATATGCGACAG
GCTACAGTGCGGCCCAAGCGCTGAGCAGCCAGATCTTAAAAGAAGGCAAGCCTGCGGTTGAGCGTTATACCGAATTCTTA
AAAGCGGGAAGCTCAGAATACCCGATCGACATACTGAAAAAAGCGGGAGTCGATATGACATCGCCTGAACCGATCGAGGC
GGCCTGCAAAATGTTTGAAGAGAAACTGAATGAAATGGAAGAGCTCCTTTCGAAAGTGAACCCGTCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

97.537

0.488