Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   OM992_RS06185 Genome accession   NZ_CP110268
Coordinates   1172981..1173934 (+) Length   317 a.a.
NCBI ID   WP_264819967.1    Uniprot ID   -
Organism   Bacillus siamensis strain YB-1631     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1167981..1178934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS06160 (OM992_06160) argF 1169798..1170769 (+) 972 WP_264819965.1 ornithine carbamoyltransferase -
  OM992_RS06165 (OM992_06165) - 1170846..1171025 (+) 180 WP_016938252.1 YjzC family protein -
  OM992_RS06170 (OM992_06170) - 1171062..1171247 (-) 186 WP_016938251.1 YjzD family protein -
  OM992_RS06175 (OM992_06175) - 1171509..1172243 (+) 735 WP_016938250.1 hypothetical protein -
  OM992_RS06180 (OM992_06180) - 1172326..1172892 (+) 567 WP_264820294.1 hypothetical protein -
  OM992_RS06185 (OM992_06185) med 1172981..1173934 (+) 954 WP_264819967.1 BMP family ABC transporter substrate-binding protein Regulator
  OM992_RS06190 (OM992_06190) comZ 1173947..1174138 (+) 192 WP_003155061.1 ComZ family protein Regulator
  OM992_RS06195 (OM992_06195) - 1174168..1174395 (-) 228 WP_264819968.1 hypothetical protein -
  OM992_RS06200 (OM992_06200) - 1174561..1175499 (+) 939 WP_016938246.1 beta-ketoacyl-ACP synthase III -
  OM992_RS06205 (OM992_06205) fabF 1175523..1176761 (+) 1239 WP_029575326.1 beta-ketoacyl-ACP synthase II -
  OM992_RS06210 (OM992_06210) - 1176847..1177632 (+) 786 WP_264819969.1 DUF2268 domain-containing protein -
  OM992_RS06215 (OM992_06215) - 1177805..1178791 (+) 987 WP_016938243.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35365.00 Da        Isoelectric Point: 4.6686

>NTDB_id=753648 OM992_RS06185 WP_264819967.1 1172981..1173934(+) (med) [Bacillus siamensis strain YB-1631]
MITRLVMVFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
LHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKNDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYKKLKEEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTIIAEQYNNGTLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=753648 OM992_RS06185 WP_264819967.1 1172981..1173934(+) (med) [Bacillus siamensis strain YB-1631]
TTGATCACCAGGCTTGTCATGGTCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGGAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACCTGGTATGGGGCACAAAAGGTTATAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCTGATGAAGATATTTTAAAAGCGATAGATGAT
TTGCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGTAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAACGATAATGTCACAAGCGTTCATCTTATGGGAGAAGCGA
TGGGCTTTTTTGGGGGAATGACGGCCGCCCATATGTCAAAAACCAATGAGGTCGGCGTCATCGCCTCGTTTTTATGGCAG
CCTGAGGTAGACGGCTTTATTAAAGGGGCAAAATATGAAAAGCCCGATATCACCGTCAATACTGAATTTACGGACCATTG
GGATAACGGCAATGAAGCACTGCATCTTTATAAGAAGTTAAAAGAAGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATTAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAACCTC
GGCAAAAACACGGTGCTGACAAGCACCGTGCAAAATGTAGACAAAGCCTATACAATAATCGCCGAGCAATATAATAACGG
CACGCTCAAGAGCGGAGATCACAACTTCGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCGAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

77.918

100

0.779