Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   QE150_RS03845 Genome accession   NZ_CP123993
Coordinates   623347..623862 (-) Length   171 a.a.
NCBI ID   WP_005109472.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab4294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 618347..628862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE150_RS03820 (QE150_03820) - 618893..620536 (+) 1644 WP_000281764.1 nitrite/sulfite reductase -
  QE150_RS03825 (QE150_03825) - 620529..621014 (+) 486 WP_000935247.1 DUF934 domain-containing protein -
  QE150_RS03830 (QE150_03830) - 621097..621450 (+) 354 WP_270901541.1 SMR family transporter -
  QE150_RS03835 (QE150_03835) - 621493..621936 (-) 444 WP_001176580.1 VOC family protein -
  QE150_RS03840 (QE150_03840) - 622063..623238 (-) 1176 WP_270901542.1 thiolase family protein -
  QE150_RS03845 (QE150_03845) fimT 623347..623862 (-) 516 WP_005109472.1 GspH/FimT family pseudopilin Machinery gene
  QE150_RS03850 (QE150_03850) omp38 624244..625275 (+) 1032 WP_005109473.1 outer membrane protein Omp38 -
  QE150_RS03855 (QE150_03855) - 625400..625558 (-) 159 WP_000692859.1 hypothetical protein -
  QE150_RS03860 (QE150_03860) - 625562..626767 (-) 1206 WP_114253278.1 RtcB family protein -
  QE150_RS03865 (QE150_03865) - 627044..628504 (-) 1461 WP_270901543.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19584.81 Da        Isoelectric Point: 8.4960

>NTDB_id=753639 QE150_RS03845 WP_005109472.1 623347..623862(-) (fimT) [Acinetobacter baumannii strain Ab4294]
MFKSPGFTIVELAITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NHVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGNSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=753639 QE150_RS03845 WP_005109472.1 623347..623862(-) (fimT) [Acinetobacter baumannii strain Ab4294]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCGCTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCACGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAATTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427