Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | OM992_RS00580 | Genome accession | NZ_CP110268 |
| Coordinates | 104180..106615 (+) | Length | 811 a.a. |
| NCBI ID | WP_047477921.1 | Uniprot ID | - |
| Organism | Bacillus siamensis strain YB-1631 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 99180..111615
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OM992_RS00565 (OM992_00565) | ctsR | 102057..102521 (+) | 465 | WP_016935919.1 | transcriptional regulator CtsR | - |
| OM992_RS00570 (OM992_00570) | - | 102535..103092 (+) | 558 | WP_016935918.1 | UvrB/UvrC motif-containing protein | - |
| OM992_RS00575 (OM992_00575) | - | 103092..104183 (+) | 1092 | WP_016935917.1 | protein arginine kinase | - |
| OM992_RS00580 (OM992_00580) | clpC | 104180..106615 (+) | 2436 | WP_047477921.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| OM992_RS00585 (OM992_00585) | radA | 106709..108088 (+) | 1380 | WP_016935915.1 | DNA repair protein RadA | Machinery gene |
| OM992_RS00590 (OM992_00590) | disA | 108092..109174 (+) | 1083 | WP_003156401.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| OM992_RS00595 (OM992_00595) | - | 109288..110388 (+) | 1101 | WP_016935914.1 | PIN/TRAM domain-containing protein | - |
| OM992_RS00600 (OM992_00600) | ispD | 110402..111100 (+) | 699 | WP_049628790.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| OM992_RS00605 (OM992_00605) | ispF | 111093..111569 (+) | 477 | WP_016935912.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90164.58 Da Isoelectric Point: 5.7558
>NTDB_id=753631 OM992_RS00580 WP_047477921.1 104180..106615(+) (clpC) [Bacillus siamensis strain YB-1631]
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGTSGAGTNSSAN
TPTLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDEPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTDAAKAKVADEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGTSGAGTNSSAN
TPTLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDEPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTDAAKAKVADEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN
Nucleotide
Download Length: 2436 bp
>NTDB_id=753631 OM992_RS00580 WP_047477921.1 104180..106615(+) (clpC) [Bacillus siamensis strain YB-1631]
ATGATGTTTGGAAGATTTACAGAGCGGGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATATTATTAGGGTTAGTCCGTGAAGGTGAAGGGATAGCATTTAAAGCTTTAGAAGCGCTTG
GCCTCAATTCAGATAAAATGCAGAAAGAAGTGGAAAGTTTGATTGGCCGAGGGCAGGAAAGCACAACCTCTGTCCCTCAT
TACACGCCTAGAGCCAAAAAGGTAATAGAACTATCAATGGATGAAGCCAGAAAGCTCGGTCATTCTTATGTAGGAACAGA
GCACATACTTCTTGGGCTGATTCGTGAAGGTGAGGGAGTCGCCGCGAGAGTACTGAATAATCTGGGTGTCAGTCTCAATA
AGGCGAGACAGCAGGTTCTACAGCTTCTCGGAAGCAATGAGACAGGGACATCTGGAGCGGGGACAAATAGCAGCGCAAAC
ACGCCGACGCTTGACAGTCTGGCGCGTGATTTAACCGCGATTGCGAGGGAAGACAGCCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACAAAGAATAATCCCGTTCTTATTGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCTGAAGGTCTCGCACAGCAGATCATCAACAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACATTAGACATGGGAACGGTTGTAGCAGGCACGAAATACCGCGGAGAATTTGAAGACCGTTTGAAAAAAGTAATGGA
TGAAATACGTCAGGCCGGCAATATCATTTTATTCATTGACGAATTGCACACACTGATCGGAGCTGGAGGAGCAGAAGGCG
CGATTGACGCGTCGAATATTTTAAAACCTTCACTCGCTCGCGGAGAGCTTCAGTGCATCGGTGCGACAACGCTTGATGAA
TACCGCAAATATATCGAAAAAGACGCAGCTCTGGAGCGCCGCTTCCAGCCGATTCAGGTGGATGAGCCGTCAGTCGATGA
AAGCATTCAGATCTTAAAAGGTCTCCGTGACCGCTATGAAGCGCATCACCGCGTATCTATTACCGATGAAGCAATCGAAG
CGGCGGTTAAATTGTCTGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGACGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCCTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAAAGCCAGGAGTTTGAAAAAGCGGCTTCTCTTCGTGATACGGAGCAGCGCTTGAGAGAACAGG
TGGAAGATACGAAAAAAACGTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATCGCAATGGTG
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCGCAAACGGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCACTCCCGCGTCATTGGCCAGGATGAAGCCGTTGTAGCCGTTGCGAAGGCTGTCAGACGTGCAAGAGCCGGTTTGAAGG
ATCCGAAACGTCCGATCGGTTCATTCATCTTCTTAGGCCCTACAGGCGTAGGGAAGACAGAGCTGGCAAGAGCGCTGGCG
GAATCCATTTTCGGTGATGAAGAAGCGATGATCAGAGTGGATATGTCCGAATATATGGAGAAACATTCGACTTCGCGTCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACGGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATTCTCCTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTTGATTTCCGCAACACGATTCTGATTATGACGTCAAATGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTGGGCTTCAATGTTCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTCATGGGAGAGC
TGAAGCGTGCCTTCAGACCTGAATTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGACCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATAGAGCTGACGGATGC
TGCAAAAGCAAAAGTAGCAGACGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGACCGGTTATCAGAAGAGCTTCTCAGAGGCAATATTGATAAGGGCCAGCACATCGTTCTTGATGTTGAAGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACGAACTAA
ATGATGTTTGGAAGATTTACAGAGCGGGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATATTATTAGGGTTAGTCCGTGAAGGTGAAGGGATAGCATTTAAAGCTTTAGAAGCGCTTG
GCCTCAATTCAGATAAAATGCAGAAAGAAGTGGAAAGTTTGATTGGCCGAGGGCAGGAAAGCACAACCTCTGTCCCTCAT
TACACGCCTAGAGCCAAAAAGGTAATAGAACTATCAATGGATGAAGCCAGAAAGCTCGGTCATTCTTATGTAGGAACAGA
GCACATACTTCTTGGGCTGATTCGTGAAGGTGAGGGAGTCGCCGCGAGAGTACTGAATAATCTGGGTGTCAGTCTCAATA
AGGCGAGACAGCAGGTTCTACAGCTTCTCGGAAGCAATGAGACAGGGACATCTGGAGCGGGGACAAATAGCAGCGCAAAC
ACGCCGACGCTTGACAGTCTGGCGCGTGATTTAACCGCGATTGCGAGGGAAGACAGCCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACAAAGAATAATCCCGTTCTTATTGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCTGAAGGTCTCGCACAGCAGATCATCAACAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACATTAGACATGGGAACGGTTGTAGCAGGCACGAAATACCGCGGAGAATTTGAAGACCGTTTGAAAAAAGTAATGGA
TGAAATACGTCAGGCCGGCAATATCATTTTATTCATTGACGAATTGCACACACTGATCGGAGCTGGAGGAGCAGAAGGCG
CGATTGACGCGTCGAATATTTTAAAACCTTCACTCGCTCGCGGAGAGCTTCAGTGCATCGGTGCGACAACGCTTGATGAA
TACCGCAAATATATCGAAAAAGACGCAGCTCTGGAGCGCCGCTTCCAGCCGATTCAGGTGGATGAGCCGTCAGTCGATGA
AAGCATTCAGATCTTAAAAGGTCTCCGTGACCGCTATGAAGCGCATCACCGCGTATCTATTACCGATGAAGCAATCGAAG
CGGCGGTTAAATTGTCTGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGACGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCCTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAAAGCCAGGAGTTTGAAAAAGCGGCTTCTCTTCGTGATACGGAGCAGCGCTTGAGAGAACAGG
TGGAAGATACGAAAAAAACGTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATCGCAATGGTG
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCGCAAACGGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCACTCCCGCGTCATTGGCCAGGATGAAGCCGTTGTAGCCGTTGCGAAGGCTGTCAGACGTGCAAGAGCCGGTTTGAAGG
ATCCGAAACGTCCGATCGGTTCATTCATCTTCTTAGGCCCTACAGGCGTAGGGAAGACAGAGCTGGCAAGAGCGCTGGCG
GAATCCATTTTCGGTGATGAAGAAGCGATGATCAGAGTGGATATGTCCGAATATATGGAGAAACATTCGACTTCGCGTCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACGGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATTCTCCTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTTGATTTCCGCAACACGATTCTGATTATGACGTCAAATGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTGGGCTTCAATGTTCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTCATGGGAGAGC
TGAAGCGTGCCTTCAGACCTGAATTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGACCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATAGAGCTGACGGATGC
TGCAAAAGCAAAAGTAGCAGACGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGACCGGTTATCAGAAGAGCTTCTCAGAGGCAATATTGATAAGGGCCAGCACATCGTTCTTGATGTTGAAGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
96.424 |
100 |
0.964 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.689 |
99.014 |
0.492 |
| clpC | Streptococcus thermophilus LMD-9 |
46.481 |
100 |
0.472 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.238 |
100 |
0.47 |
| clpC | Streptococcus mutans UA159 |
44.511 |
100 |
0.455 |
| clpC | Streptococcus pneumoniae D39 |
45.264 |
100 |
0.454 |
| clpC | Streptococcus pneumoniae Rx1 |
45.264 |
100 |
0.454 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.141 |
100 |
0.453 |
| clpE | Streptococcus mutans UA159 |
53.929 |
80.025 |
0.432 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.568 |
81.628 |
0.429 |
| clpE | Streptococcus pneumoniae Rx1 |
52.568 |
81.628 |
0.429 |
| clpE | Streptococcus pneumoniae D39 |
52.568 |
81.628 |
0.429 |
| clpE | Streptococcus pneumoniae R6 |
52.568 |
81.628 |
0.429 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
50.291 |
84.834 |
0.427 |