Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   QEP20_RS20780 Genome accession   NZ_CP123977
Coordinates   4023542..4024336 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4018542..4029336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS20755 (QEP20_20755) - 4019655..4020338 (-) 684 WP_038428106.1 response regulator transcription factor -
  QEP20_RS20760 (QEP20_20760) - 4020550..4021449 (+) 900 WP_003226945.1 PepSY domain-containing protein -
  QEP20_RS20765 (QEP20_20765) - 4021611..4022111 (+) 501 WP_003226943.1 PepSY domain-containing protein -
  QEP20_RS20770 (QEP20_20770) - 4022108..4022237 (-) 130 Protein_4038 hypothetical protein -
  QEP20_RS20775 (QEP20_20775) htrA 4022258..4023460 (-) 1203 WP_015250812.1 serine protease HtrC Regulator
  QEP20_RS20780 (QEP20_20780) vicX 4023542..4024336 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  QEP20_RS20785 (QEP20_20785) walI 4024358..4025200 (-) 843 WP_029318542.1 WalRK two-component regulatory system regulator WalI -
  QEP20_RS20790 (QEP20_20790) walH 4025187..4026554 (-) 1368 WP_029318541.1 WalRK two-component regulatory system regulator WalH -
  QEP20_RS20795 (QEP20_20795) walK 4026544..4028379 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  QEP20_RS20800 (QEP20_20800) walR 4028387..4029094 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=753616 QEP20_RS20780 WP_003226939.1 4023542..4024336(-) (vicX) [Bacillus subtilis subsp. subtilis strain WH60A]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=753616 QEP20_RS20780 WP_003226939.1 4023542..4024336(-) (vicX) [Bacillus subtilis subsp. subtilis strain WH60A]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTGAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCATTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGTGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTACAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACTGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53