Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   QEP20_RS20410 Genome accession   NZ_CP123977
Coordinates   3949685..3950374 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3944685..3955374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS20390 (QEP20_20390) yxeA 3945590..3945937 (-) 348 WP_003227084.1 YxeA family protein -
  QEP20_RS20395 (QEP20_20395) yxdM 3945951..3947819 (-) 1869 WP_069703574.1 ABC transporter permease YxdM -
  QEP20_RS20400 (QEP20_20400) yxdL 3947794..3948567 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  QEP20_RS20405 (QEP20_20405) yxdK 3948711..3949688 (-) 978 WP_015385109.1 two-component system sensor histidine kinase YxdK -
  QEP20_RS20410 (QEP20_20410) braR 3949685..3950374 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  QEP20_RS20415 (QEP20_20415) iolJ 3950482..3951354 (-) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  QEP20_RS20420 (QEP20_20420) iolI 3951375..3952211 (-) 837 WP_015715014.1 2-keto-myo-inositol isomerase -
  QEP20_RS20425 (QEP20_20425) iolH 3952297..3953166 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  QEP20_RS20430 (QEP20_20430) iolG 3953186..3954220 (-) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=753613 QEP20_RS20410 WP_003243527.1 3949685..3950374(-) (braR) [Bacillus subtilis subsp. subtilis strain WH60A]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=753613 QEP20_RS20410 WP_003243527.1 3949685..3950374(-) (braR) [Bacillus subtilis subsp. subtilis strain WH60A]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCTGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406