Detailed information NTG0753600

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: OMK57_RS19030
• Genome accession: NZ_CP110264
• Coordinates: 3789848..3790993 (+)
• Length: 381 a.a.
• NCBI ID: WP_069486780.1
• Uniprot ID: -
• Organism: Bacillus halotolerans strain HMB20199
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3784848..3795993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OMK57_RS19010 (OMK57_19010)	-	3785732..3787009 (+)	1278	WP_069486781.1	pitrilysin family protein	-
OMK57_RS19015 (OMK57_19015)	-	3787006..3787707 (+)	702	WP_044159813.1	hypothetical protein	-
OMK57_RS19020 (OMK57_19020)	-	3787714..3788068 (-)	355	Protein_3696	YncE family protein	-
OMK57_RS21150	-	3788060..3788230 (-)	171	Protein_3697	YncE family protein	-
OMK57_RS19025 (OMK57_19025)	-	3788261..3789619 (-)	1359	WP_059335160.1	YncE family protein	-
OMK57_RS19030 (OMK57_19030)	rapF	3789848..3790993 (+)	1146	WP_069486780.1	tetratricopeptide repeat protein	Regulator
OMK57_RS19035 (OMK57_19035)	-	3790977..3791096 (+)	120	WP_024123223.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
OMK57_RS19040 (OMK57_19040)	speB	3791202..3792074 (-)	873	WP_069486779.1	agmatinase	-
OMK57_RS19045 (OMK57_19045)	speE	3792135..3792965 (-)	831	WP_044159821.1	spermidine synthase	-
OMK57_RS19050 (OMK57_19050)	-	3793166..3795241 (+)	2076	WP_069486778.1	transglycosylase domain-containing protein	-
OMK57_RS19055 (OMK57_19055)	-	3795519..3795834 (-)	316	Protein_3704	AMP-binding protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45560.09 Da
• Isoelectric Point: 4.7478

>NTDB_id=753600 OMK57_RS19030 WP_069486780.1 3789848..3790993(+) (rapF) [Bacillus halotolerans strain HMB20199]
MTSVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLENMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYILAIQFFKKAESKLTFVTDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYNEQTTYDIRMIQCQSLFGANFLDLKQYDKAIAHFQKAYTLAEAAQQPQLMGRTLYNIALCKQNQHSLES
AIEYVKKSIHVFEESKMLPSLPQAFFLITQIYFKLGKIDNACEYHIKGREYSIAAGDTVYLMEFEFLESLYLSGPDEEAI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASTYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=753600 OMK57_RS19030 WP_069486780.1 3789848..3790993(+) (rapF) [Bacillus halotolerans strain HMB20199]
GTGACAAGTGTCATATCTTCTTCTTCCGTTGGAGAAAAGATTAATGAATGGTATATGTACATACGCCGATTCAGCATACC
GGATGCGGAATATTTACGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGACCAGGATCTTCATTTGTATTATT
CACTGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTTGAACCGTTAGAAAACATGCGGATAGAGGAACAGCCGCGA
CTGTCCGATTTGTTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACCGGACTGCTTGAATACTACTTTAATTTCTTCAG
AGGTATGTACGAACTGGATCGCCGGGAATATATATTAGCCATTCAATTTTTTAAAAAAGCAGAGAGCAAACTGACTTTTG
TGACAGATAAAATTGATAAAGCTGAGTTCTTTTTCAAAATGTCAGAAGTTTATTACTATATGAAGCAAACTTATGTGTCC
ATGGACTATGCACGTCAAGCCTTTGAAATATACAATGAACAAACTACATATGATATCAGAATGATTCAATGCCAATCCCT
GTTTGGAGCTAACTTTTTGGATCTGAAACAGTATGATAAAGCAATTGCCCATTTCCAAAAAGCTTATACACTTGCTGAGG
CGGCACAGCAGCCGCAGCTAATGGGAAGAACGCTTTATAATATTGCACTTTGCAAGCAAAACCAACACAGTCTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCATGTATTTGAAGAATCGAAAATGCTTCCTTCACTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGCAAGATTGATAACGCTTGTGAATATCATATTAAAGGAAGAGAATATTCAATAG
CTGCCGGAGACACTGTGTACTTAATGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCTGATGAAGAAGCAATA
GAAAAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTTGCACTCGATGTTGCTAAGTATTA
TCATCAGCAGGAAAATTACAAAAAAGCATCTACTTATTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (189-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.79	100	0.798
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	99.738	0.567