Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QEP20_RS15275 Genome accession   NZ_CP123977
Coordinates   2937439..2938149 (-) Length   236 a.a.
NCBI ID   WP_015714539.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2932439..2943149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS15255 (QEP20_15255) cysK 2932491..2933426 (+) 936 WP_003229237.1 cysteine synthase A -
  QEP20_RS15260 (QEP20_15260) pepV 2933460..2934851 (-) 1392 WP_014477689.1 dipeptidase PepV -
  QEP20_RS15265 (QEP20_15265) pbuO 2934948..2936246 (+) 1299 WP_029726423.1 hypoxanthine/guanine permease PbuO -
  QEP20_RS15270 (QEP20_15270) ythQ 2936285..2937442 (-) 1158 WP_029726424.1 ABC transporter permease -
  QEP20_RS15275 (QEP20_15275) pptA 2937439..2938149 (-) 711 WP_015714539.1 ABC transporter ATP-binding protein Regulator
  QEP20_RS15280 (QEP20_15280) ytzE 2938439..2938660 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  QEP20_RS15285 (QEP20_15285) rsuA 2938782..2939501 (-) 720 WP_017695479.1 pseudouridine synthase -
  QEP20_RS15290 (QEP20_15290) murJ 2939570..2941204 (-) 1635 WP_038427842.1 lipid II flippase MurJ -
  QEP20_RS15295 (QEP20_15295) ytfP 2941407..2942669 (+) 1263 WP_029946380.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26573.65 Da        Isoelectric Point: 5.5930

>NTDB_id=753586 QEP20_RS15275 WP_015714539.1 2937439..2938149(-) (pptA) [Bacillus subtilis subsp. subtilis strain WH60A]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=753586 QEP20_RS15275 WP_015714539.1 2937439..2938149(-) (pptA) [Bacillus subtilis subsp. subtilis strain WH60A]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGCTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432