Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   OMK57_RS14090 Genome accession   NZ_CP110264
Coordinates   2803411..2804157 (-) Length   248 a.a.
NCBI ID   WP_069487108.1    Uniprot ID   -
Organism   Bacillus halotolerans strain HMB20199     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2798411..2809157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMK57_RS14065 (OMK57_14065) mreC 2798819..2799691 (-) 873 WP_010335163.1 rod shape-determining protein MreC -
  OMK57_RS14070 (OMK57_14070) mreB 2799722..2800735 (-) 1014 WP_010335164.1 cell shape-determining protein MreB -
  OMK57_RS14075 (OMK57_14075) radC 2800827..2801522 (-) 696 WP_044154171.1 DNA repair protein RadC -
  OMK57_RS14080 (OMK57_14080) - 2801560..2802129 (-) 570 WP_044154168.1 Maf family nucleotide pyrophosphatase -
  OMK57_RS14085 (OMK57_14085) - 2802280..2803278 (-) 999 WP_069487109.1 SPOR domain-containing protein -
  OMK57_RS14090 (OMK57_14090) comC 2803411..2804157 (-) 747 WP_069487108.1 A24 family peptidase Machinery gene
  OMK57_RS14095 (OMK57_14095) - 2804299..2805591 (-) 1293 WP_069487107.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  OMK57_RS14100 (OMK57_14100) valS 2805651..2808293 (-) 2643 WP_069487106.1 valine--tRNA ligase -
  OMK57_RS14105 (OMK57_14105) - 2808742..2808933 (+) 192 WP_024122364.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26537.09 Da        Isoelectric Point: 9.7865

>NTDB_id=753583 OMK57_RS14090 WP_069487108.1 2803411..2804157(-) (comC) [Bacillus halotolerans strain HMB20199]
MIPILFVLGLILGSFYYTVGCRIPLHISIISPRSACSFCRRTLTPTELIPVLSFILQKGNCKSCGQKLSLMYPAAELSTA
SLFAAAGFRFGLSWELIVALLFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLLSWYEGFIGAAAGFLLLAFI
AVITHGGIGGGDIKLFAVIGLVLGVKMLAAAFFFSVLIGALYGAAAVLFGRLARKQPLPFAPAIAAGSIFAYLYGDSIIS
FYVKTALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=753583 OMK57_RS14090 WP_069487108.1 2803411..2804157(-) (comC) [Bacillus halotolerans strain HMB20199]
ATGATTCCGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTATACGGTTGGATGCCGTATACCCTTGCACAT
ATCCATCATAAGTCCGCGTTCGGCATGTTCCTTTTGCCGTCGAACCCTAACCCCGACGGAATTAATCCCTGTTTTATCTT
TTATTCTGCAAAAAGGCAATTGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTACCCGGCGGCAGAGCTCTCGACAGCG
AGTTTATTTGCAGCCGCGGGATTTCGTTTCGGTTTGTCTTGGGAACTGATTGTTGCGTTGCTGTTTCTTTCTCTTCTTAT
TATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATCATTTCTCCGCTTCTTTCTTGGTATGAAGGCTTTATAGGCGCGGCTGCCGGTTTTCTTTTACTGGCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATATTAAATTATTTGCCGTTATCGGCCTTGTGCTTGGTGTGAAAAT
GCTTGCTGCCGCCTTTTTCTTTTCTGTTCTTATAGGCGCATTGTATGGAGCTGCCGCTGTACTGTTCGGAAGGCTGGCCA
GAAAACAGCCGCTTCCCTTTGCCCCGGCAATTGCAGCAGGAAGCATTTTCGCTTATTTATACGGTGACTCTATCATATCC
TTTTATGTCAAAACGGCGTTAGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

81.048

100

0.81