Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   OMK57_RS12990 Genome accession   NZ_CP110264
Coordinates   2603591..2604358 (-) Length   255 a.a.
NCBI ID   WP_024122086.1    Uniprot ID   A0A9Q4HQQ6
Organism   Bacillus halotolerans strain HMB20199     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2598591..2609358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMK57_RS12970 (OMK57_12970) - 2598764..2599576 (-) 813 WP_044154519.1 pyruvate, water dikinase regulatory protein -
  OMK57_RS12975 (OMK57_12975) ccpN 2599602..2600240 (-) 639 WP_024122084.1 transcriptional regulator CcpN -
  OMK57_RS12980 (OMK57_12980) glyS 2600374..2602413 (-) 2040 WP_069487179.1 glycine--tRNA ligase subunit beta -
  OMK57_RS12985 (OMK57_12985) glyQ 2602406..2603293 (-) 888 WP_010334976.1 glycine--tRNA ligase subunit alpha -
  OMK57_RS12990 (OMK57_12990) recO 2603591..2604358 (-) 768 WP_024122086.1 DNA repair protein RecO Machinery gene
  OMK57_RS12995 (OMK57_12995) - 2604395..2604538 (-) 144 WP_024122087.1 YqzL family protein -
  OMK57_RS13000 (OMK57_13000) era 2604682..2605587 (-) 906 WP_044154513.1 GTPase Era -
  OMK57_RS13005 (OMK57_13005) cdd 2605568..2605978 (-) 411 WP_024122088.1 cytidine deaminase -
  OMK57_RS13010 (OMK57_13010) - 2606092..2606469 (-) 378 WP_059335436.1 diacylglycerol kinase family protein -
  OMK57_RS13015 (OMK57_13015) ybeY 2606450..2606923 (-) 474 WP_010334982.1 rRNA maturation RNase YbeY -
  OMK57_RS13020 (OMK57_13020) pgpH 2606924..2609059 (-) 2136 WP_081638339.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29333.03 Da        Isoelectric Point: 8.3105

>NTDB_id=753575 OMK57_RS12990 WP_024122086.1 2603591..2604358(-) (recO) [Bacillus halotolerans strain HMB20199]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKNELKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=753575 OMK57_RS12990 WP_024122086.1 2603591..2604358(-) (recO) [Bacillus halotolerans strain HMB20199]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATTGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCCTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCTGAGCTCGTTGACAAAGGCACAGAAGAAAAAAAACC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGACGAAGGAACAGACCCGGATGTTATTACCTTTA
TTGTTCAAATGAAGATGCTTGCTGTAATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCATCGCTGCTTTGACAAAGACCCTTACAAGGTGCCGATTAA
GCCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGACCTTTCAAGGATTGGCAATGTGTCTTTAAAGCAGGAAA
CGAAAAATGAATTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGGGTTTATCTGAAATCGAAGCGTTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

94.51

100

0.945