Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   OMK57_RS12460 Genome accession   NZ_CP110264
Coordinates   2513227..2514030 (-) Length   267 a.a.
NCBI ID   WP_010334880.1    Uniprot ID   A0A9Q4HNW6
Organism   Bacillus halotolerans strain HMB20199     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2508227..2519030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMK57_RS12435 (OMK57_12435) - 2509225..2509968 (-) 744 WP_059352389.1 glycerophosphodiester phosphodiesterase -
  OMK57_RS12440 (OMK57_12440) - 2510058..2510678 (-) 621 WP_083244528.1 N-acetylmuramoyl-L-alanine amidase -
  OMK57_RS12445 (OMK57_12445) - 2510701..2510994 (-) 294 WP_069487405.1 hypothetical protein -
  OMK57_RS12450 (OMK57_12450) - 2511321..2511455 (+) 135 WP_024122000.1 hypothetical protein -
  OMK57_RS12455 (OMK57_12455) - 2511528..2512646 (+) 1119 WP_059293833.1 NADH-dependent flavin oxidoreductase -
  OMK57_RS12460 (OMK57_12460) spo0A 2513227..2514030 (-) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  OMK57_RS12465 (OMK57_12465) spoIVB 2514305..2515582 (-) 1278 WP_024122004.1 SpoIVB peptidase -
  OMK57_RS12470 (OMK57_12470) recN 2515757..2517487 (-) 1731 WP_069487198.1 DNA repair protein RecN Machinery gene
  OMK57_RS12475 (OMK57_12475) argR 2517523..2517972 (-) 450 WP_010334883.1 arginine repressor ArgR -
  OMK57_RS12480 (OMK57_12480) - 2518069..2518917 (-) 849 WP_069487197.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29719.20 Da        Isoelectric Point: 6.3913

>NTDB_id=753564 OMK57_RS12460 WP_010334880.1 2513227..2514030(-) (spo0A) [Bacillus halotolerans strain HMB20199]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKRKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=753564 OMK57_RS12460 WP_010334880.1 2513227..2514030(-) (spo0A) [Bacillus halotolerans strain HMB20199]
GTGGAGAAAATTAAAGTTTGTGTTGCTGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTCATCGGAGTTGCGTATAATGGACAGGAATGCCTGTCGCTATTTAAAGAAAAAGATCCTGATGTGCTCG
TCTTGGATATTATTATGCCTCATTTGGACGGACTGGCTGTTTTAGAGCGACTGAGAGAATCCGACCTGAAAAAACAGCCA
AACGTCATCATGCTGACAGCCTTCGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGAGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGCGCAC
CGTCATCACAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAAAGGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCTGCACATATTAAAGGCTATCTCTATCTGCGTGAAGCGATCTCAATGGTGTACAACGATAT
CGAGCTGCTCGGCAGTATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCTAGCCGTGTTGAAA
GAGCGATCCGCCACGCGATTGAAGTGGCATGGAGCAGAGGGAATATTGATTCCATTTCCTCATTGTTCGGCTATACGGTC
AGCATGACGAAGGCAAAACCTACAAATTCAGAGTTCATTGCGATGGTTGCAGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996