Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OMK57_RS11480 Genome accession   NZ_CP110264
Coordinates   2336818..2337438 (+) Length   206 a.a.
NCBI ID   WP_069487320.1    Uniprot ID   -
Organism   Bacillus halotolerans strain HMB20199     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2331818..2342438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMK57_RS11440 (OMK57_11440) - 2332957..2333463 (-) 507 WP_044155315.1 PTS glucose transporter subunit IIA -
  OMK57_RS11445 (OMK57_11445) - 2333600..2334019 (+) 420 WP_059352454.1 Hsp20/alpha crystallin family protein -
  OMK57_RS11450 (OMK57_11450) - 2334041..2334415 (-) 375 WP_044155301.1 YppG family protein -
  OMK57_RS11455 (OMK57_11455) - 2334603..2334791 (+) 189 WP_044155293.1 YppF family protein -
  OMK57_RS11460 (OMK57_11460) - 2334825..2335196 (-) 372 WP_095532968.1 YppE family protein -
  OMK57_RS11465 (OMK57_11465) - 2335242..2335487 (-) 246 WP_069487322.1 DUF5446 family protein -
  OMK57_RS11470 (OMK57_11470) sspM 2335685..2335789 (+) 105 WP_010334703.1 acid-soluble spore protein SspM -
  OMK57_RS11475 (OMK57_11475) - 2335815..2336777 (-) 963 WP_069487321.1 DUF2515 domain-containing protein -
  OMK57_RS11480 (OMK57_11480) recU 2336818..2337438 (+) 621 WP_069487320.1 Holliday junction resolvase RecU Machinery gene
  OMK57_RS11485 (OMK57_11485) - 2337460..2340207 (+) 2748 WP_069487319.1 PBP1A family penicillin-binding protein -
  OMK57_RS11490 (OMK57_11490) - 2340280..2340774 (-) 495 WP_059352451.1 YpoC family protein -
  OMK57_RS11495 (OMK57_11495) nth 2340771..2341430 (-) 660 WP_059293710.1 endonuclease III -
  OMK57_RS11500 (OMK57_11500) dnaD 2341449..2342147 (-) 699 WP_044155229.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23951.11 Da        Isoelectric Point: 9.6373

>NTDB_id=753563 OMK57_RS11480 WP_069487320.1 2336818..2337438(+) (recU) [Bacillus halotolerans strain HMB20199]
MIRYPNGKTFQPKHPVSSQNSHKRALSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEADRLFYFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=753563 OMK57_RS11480 WP_069487320.1 2336818..2337438(+) (recU) [Bacillus halotolerans strain HMB20199]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATCCGGTTTCATCCCAAAACAGTCATAAAAGAGCGCTATC
TTACAGTAATCGCGGGATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTGA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCTGCAGTCATAAAAGAAGCCTAT
TTTAAACAATCATCGACAACAGATTATAACGGAATTTATAAAGGGCGGTACATTGACTTTGAGGCGAAAGAGACAAAAAA
CAAAACCTCTTTCCCTCTGCAGAATTTCCATGACCATCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGGCCAGGTTTATTTTTTAGAAGCCGATAGGCTGTTTTATTTCTGGGAAAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTAGAGGAAGCAGCTTATCCGATTTCTCTTGGATACGCGCCAAGAAT
TGATTATATTAGTATTATTGAGCAGCTTTATTTTTCGCCATCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

95.631

100

0.956