Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   QEP20_RS09115 Genome accession   NZ_CP123977
Coordinates   1750239..1750670 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1745239..1755670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS09095 (QEP20_09095) spoVS 1745800..1746060 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  QEP20_RS09100 (QEP20_09100) tdh 1746326..1747369 (+) 1044 WP_029726482.1 L-threonine 3-dehydrogenase -
  QEP20_RS09105 (QEP20_09105) kbl 1747382..1748560 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  QEP20_RS09110 (QEP20_09110) miaB 1748708..1750237 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  QEP20_RS09115 (QEP20_09115) ymcA 1750239..1750670 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  QEP20_RS09120 (QEP20_09120) cotE 1750932..1751477 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  QEP20_RS09125 (QEP20_09125) hexA 1751610..1754186 (+) 2577 WP_029726481.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=753541 QEP20_RS09115 WP_003231834.1 1750239..1750670(+) (ymcA) [Bacillus subtilis subsp. subtilis strain WH60A]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=753541 QEP20_RS09115 WP_003231834.1 1750239..1750670(+) (ymcA) [Bacillus subtilis subsp. subtilis strain WH60A]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1