Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   OMK57_RS01995 Genome accession   NZ_CP110264
Coordinates   373567..374004 (-) Length   145 a.a.
NCBI ID   WP_069487487.1    Uniprot ID   -
Organism   Bacillus halotolerans strain HMB20199     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 368567..379004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMK57_RS01960 (OMK57_01960) - 369099..369554 (+) 456 WP_059291986.1 RDD family protein -
  OMK57_RS01965 (OMK57_01965) - 369666..369971 (+) 306 WP_233403648.1 YckD family protein -
  OMK57_RS01970 (OMK57_01970) - 370107..370526 (+) 420 WP_069487484.1 MarR family winged helix-turn-helix transcriptional regulator -
  OMK57_RS01975 (OMK57_01975) - 370517..370855 (+) 339 WP_069487485.1 DUF3147 family protein -
  OMK57_RS01980 (OMK57_01980) - 370872..371600 (+) 729 WP_069487486.1 AAA family ATPase -
  OMK57_RS01985 (OMK57_01985) - 371673..373106 (+) 1434 WP_059291981.1 glycoside hydrolase family 1 protein -
  OMK57_RS01990 (OMK57_01990) nin/comJ 373142..373540 (-) 399 WP_024120177.1 competence protein ComJ Regulator
  OMK57_RS01995 (OMK57_01995) nucA/comI 373567..374004 (-) 438 WP_069487487.1 DNA-entry nuclease Machinery gene
  OMK57_RS02000 (OMK57_02000) tlpC 374190..375914 (-) 1725 WP_069487488.1 methyl-accepting chemotaxis protein TlpC -
  OMK57_RS02005 (OMK57_02005) hxlB 376023..376580 (-) 558 WP_044161924.1 6-phospho-3-hexuloisomerase -
  OMK57_RS02010 (OMK57_02010) hxlA 376586..377218 (-) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  OMK57_RS02015 (OMK57_02015) hxlR 377450..377812 (+) 363 WP_044161922.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16042.79 Da        Isoelectric Point: 4.2623

>NTDB_id=753533 OMK57_RS01995 WP_069487487.1 373567..374004(-) (nucA/comI) [Bacillus halotolerans strain HMB20199]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDDQKTSQTEEYDETLAFPSERYPETANHIKDAIREGHSDVCTIDRDGAEERR
EQSLKDVPSKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=753533 OMK57_RS01995 WP_069487487.1 373567..374004(-) (nucA/comI) [Bacillus halotolerans strain HMB20199]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTCGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGATCAAAAAACGTCTCAAACAGAAGAATATGACGAAACACTGGCCTTCCCTTCTGAGCGTTATCCTGAGACAG
CAAATCATATCAAGGACGCAATACGTGAGGGGCATTCAGATGTGTGCACCATAGACAGAGACGGAGCTGAGGAACGCCGC
GAACAATCATTAAAAGACGTACCTTCCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGACGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

92.361

99.31

0.917