Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OMJ04_RS24690 Genome accession   NZ_CP110263
Coordinates   5078615..5079565 (-) Length   316 a.a.
NCBI ID   WP_053536781.1    Uniprot ID   A0A9X1IUS9
Organism   Peribacillus frigoritolerans strain HMB20428     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5073615..5084565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMJ04_RS24675 (OMJ04_24675) - 5075765..5076712 (-) 948 WP_127777705.1 siderophore ABC transporter substrate-binding protein -
  OMJ04_RS24680 (OMJ04_24680) - 5076923..5077681 (-) 759 WP_264895915.1 ABC transporter ATP-binding protein -
  OMJ04_RS24685 (OMJ04_24685) - 5077675..5078622 (-) 948 WP_053536780.1 iron chelate uptake ABC transporter family permease subunit -
  OMJ04_RS24690 (OMJ04_24690) ceuB 5078615..5079565 (-) 951 WP_053536781.1 ABC transporter permease Machinery gene
  OMJ04_RS24695 (OMJ04_24695) - 5079831..5080172 (+) 342 WP_226990537.1 DUF1450 domain-containing protein -
  OMJ04_RS24700 (OMJ04_24700) - 5080970..5081233 (-) 264 WP_264895916.1 hypothetical protein -
  OMJ04_RS24705 (OMJ04_24705) - 5082647..5083303 (+) 657 WP_264895917.1 WxL domain-containing protein -
  OMJ04_RS24710 (OMJ04_24710) - 5083332..5084027 (+) 696 WP_264895918.1 WxL domain-containing protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34941.26 Da        Isoelectric Point: 9.6490

>NTDB_id=753511 OMJ04_RS24690 WP_053536781.1 5078615..5079565(-) (ceuB) [Peribacillus frigoritolerans strain HMB20428]
MKIRYLVMALIVLSFTSLFIGVKDITPLDLLNLSDDKVQIMLQSRFPRMVTIVIAGIVMSISGLIMQQLSRNKFVSPTTA
GTMDSARLGLLLAIIIFPSAALIEKMAFAFIFALAGTFLFMKILDQVKYKDTIFIPLVGLMFGNIVGSISTFFAYKYDLI
QSLNTWMNGDFSMIMSGRYELIYLSIPLVILAYFFANKFTVAGMGEEFAINLGLNYKFIVNFGLIIVALSSTVVLLTVGT
IPFIGLIVPNIVSLYLGDNLKKSLSHTALLGAVFLLICDILGRILIYPFEIPIGLVVGVIGSAVFIYLILRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=753511 OMJ04_RS24690 WP_053536781.1 5078615..5079565(-) (ceuB) [Peribacillus frigoritolerans strain HMB20428]
ATGAAGATAAGATATTTAGTCATGGCGTTAATTGTTCTATCATTTACGTCATTATTCATTGGTGTAAAAGATATTACCCC
CCTGGATTTATTGAATCTAAGTGATGATAAAGTGCAAATCATGCTGCAAAGCCGTTTCCCTAGAATGGTGACCATAGTCA
TTGCCGGTATTGTGATGAGTATAAGCGGTCTGATCATGCAGCAATTGAGCCGCAATAAATTTGTATCCCCGACGACTGCC
GGTACCATGGACTCTGCAAGGCTGGGACTTCTTCTTGCCATTATCATTTTTCCATCGGCAGCACTTATTGAGAAAATGGC
ATTCGCTTTCATATTCGCTTTGGCAGGTACATTCTTGTTCATGAAAATTCTTGATCAAGTGAAATATAAGGATACGATCT
TCATTCCATTGGTTGGTTTGATGTTTGGTAATATCGTAGGATCGATCTCGACTTTCTTTGCCTATAAATATGATTTGATT
CAAAGCCTCAACACATGGATGAATGGTGATTTCTCGATGATCATGTCGGGAAGGTACGAACTTATATATCTAAGTATCCC
GCTAGTCATTCTCGCATACTTCTTTGCCAATAAATTCACTGTGGCAGGGATGGGAGAGGAGTTTGCTATCAATCTAGGAC
TCAATTATAAGTTTATAGTCAATTTTGGATTGATCATCGTGGCATTATCCTCCACTGTCGTTTTGTTAACGGTGGGAACG
ATTCCTTTCATAGGATTGATCGTACCAAATATTGTATCCCTTTACCTTGGTGACAATTTGAAAAAGAGTCTTTCTCATAC
AGCATTGCTAGGGGCAGTCTTCCTATTGATCTGCGATATTCTGGGCAGGATCCTCATATATCCGTTTGAAATCCCGATCG
GACTCGTGGTTGGTGTGATAGGAAGCGCCGTATTTATCTATCTGATACTGAGGAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.316

100

0.503