Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | N6N74_RS05790 | Genome accession | NZ_CP110260 |
| Coordinates | 1153014..1153643 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839162.1 | Uniprot ID | A0A2T3RS91 |
| Organism | Escherichia albertii strain KBSW16i | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1134246..1166490 | 1153014..1153643 | within | 0 |
Gene organization within MGE regions
Location: 1134246..1166490
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N6N74_RS05665 (N6N74_05670) | - | 1134614..1135579 (-) | 966 | WP_052931679.1 | hypothetical protein | - |
| N6N74_RS05670 (N6N74_05675) | - | 1135560..1136081 (-) | 522 | WP_052931681.1 | toxin YdaT family protein | - |
| N6N74_RS05675 (N6N74_05680) | - | 1136065..1136292 (-) | 228 | WP_000476986.1 | Cro/CI family transcriptional regulator | - |
| N6N74_RS05680 (N6N74_05685) | - | 1136370..1136777 (+) | 408 | WP_001003379.1 | helix-turn-helix domain-containing protein | - |
| N6N74_RS05685 (N6N74_05690) | - | 1136968..1137123 (+) | 156 | WP_000379575.1 | DUF1391 family protein | - |
| N6N74_RS05690 (N6N74_05695) | ydfB | 1137125..1137253 (+) | 129 | WP_000344964.1 | protein YdfB | - |
| N6N74_RS05695 (N6N74_05700) | ydfC | 1137283..1137501 (+) | 219 | WP_001171942.1 | protein YdfC | - |
| N6N74_RS05700 (N6N74_05705) | - | 1137524..1137931 (+) | 408 | WP_000394520.1 | hypothetical protein | - |
| N6N74_RS05705 (N6N74_05710) | - | 1137909..1138142 (-) | 234 | WP_000920491.1 | hypothetical protein | - |
| N6N74_RS05710 (N6N74_05715) | dicB | 1138700..1138888 (+) | 189 | WP_000449200.1 | cell division inhibition protein DicB | - |
| N6N74_RS05715 (N6N74_05720) | - | 1138885..1139075 (+) | 191 | Protein_1124 | DUF1482 family protein | - |
| N6N74_RS05720 (N6N74_05725) | - | 1139168..1141648 (+) | 2481 | WP_025237254.1 | exonuclease | - |
| N6N74_RS05725 (N6N74_05730) | - | 1141715..1141966 (+) | 252 | WP_000273158.1 | DUF4224 domain-containing protein | - |
| N6N74_RS05730 (N6N74_05735) | - | 1141935..1142954 (+) | 1020 | WP_024227504.1 | tyrosine-type recombinase/integrase | - |
| N6N74_RS05735 (N6N74_05740) | yccA | 1143363..1144022 (+) | 660 | WP_000375136.1 | FtsH protease modulator YccA | - |
| N6N74_RS05740 (N6N74_05745) | tusE | 1144114..1144443 (+) | 330 | WP_024164819.1 | sulfurtransferase TusE | - |
| N6N74_RS05745 (N6N74_05750) | yccX | 1144440..1144718 (-) | 279 | WP_044712051.1 | acylphosphatase | - |
| N6N74_RS05750 (N6N74_05755) | rlmI | 1144812..1146002 (+) | 1191 | WP_000116313.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| N6N74_RS05755 (N6N74_05760) | hspQ | 1146060..1146377 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| N6N74_RS05760 (N6N74_05765) | - | 1146422..1146835 (-) | 414 | WP_002462360.1 | CoA-binding protein | - |
| N6N74_RS05765 (N6N74_05770) | - | 1147008..1147670 (+) | 663 | WP_149992714.1 | DUF2057 family protein | - |
| N6N74_RS05770 (N6N74_05775) | mgsA | 1147766..1148224 (+) | 459 | WP_000424182.1 | methylglyoxal synthase | - |
| N6N74_RS05775 (N6N74_05780) | helD | 1148256..1150310 (-) | 2055 | WP_044711982.1 | DNA helicase IV | - |
| N6N74_RS05780 (N6N74_05785) | - | 1150433..1150879 (+) | 447 | WP_001261228.1 | YccF domain-containing protein | - |
| N6N74_RS05785 (N6N74_05790) | yccS | 1150889..1153054 (+) | 2166 | WP_072243810.1 | YccS family putative transporter | - |
| N6N74_RS05790 (N6N74_05795) | sxy/tfoX | 1153014..1153643 (-) | 630 | WP_000839162.1 | TfoX/Sxy family DNA transformation protein | Regulator |
| N6N74_RS05795 (N6N74_05800) | sulA | 1153861..1154370 (+) | 510 | WP_000288703.1 | SOS-induced cell division inhibitor SulA | - |
| N6N74_RS05800 (N6N74_05805) | ompA | 1154726..1155778 (+) | 1053 | WP_024164823.1 | porin OmpA | - |
| N6N74_RS05805 (N6N74_05810) | matP | 1155853..1156305 (-) | 453 | WP_000877164.1 | macrodomain Ter protein MatP | - |
| N6N74_RS05810 (N6N74_05815) | - | 1156491..1158251 (+) | 1761 | WP_059239028.1 | AAA family ATPase | - |
| N6N74_RS05815 (N6N74_05820) | fabA | 1158320..1158838 (+) | 519 | WP_002462364.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| N6N74_RS05820 (N6N74_05825) | rmf | 1158907..1159074 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| N6N74_RS05825 (N6N74_05830) | pqiC | 1159331..1159894 (-) | 564 | WP_044709632.1 | membrane integrity-associated transporter subunit PqiC | - |
| N6N74_RS05830 (N6N74_05835) | pqiB | 1159891..1161531 (-) | 1641 | WP_025237261.1 | intermembrane transport protein PqiB | - |
| N6N74_RS05835 (N6N74_05840) | pqiA | 1161536..1162789 (-) | 1254 | WP_000333197.1 | membrane integrity-associated transporter subunit PqiA | - |
| N6N74_RS05840 (N6N74_05845) | - | 1162990..1164897 (-) | 1908 | WP_113622809.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24291.21 Da Isoelectric Point: 9.0264
>NTDB_id=753452 N6N74_RS05790 WP_000839162.1 1153014..1153643(-) (sxy/tfoX) [Escherichia albertii strain KBSW16i]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE
Nucleotide
Download Length: 630 bp
>NTDB_id=753452 N6N74_RS05790 WP_000839162.1 1153014..1153643(-) (sxy/tfoX) [Escherichia albertii strain KBSW16i]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGAGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGAGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
90.431 |
100 |
0.904 |