Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N6N69_RS13625 Genome accession   NZ_CP110258
Coordinates   2808362..2808991 (-) Length   209 a.a.
NCBI ID   WP_105227746.1    Uniprot ID   -
Organism   Escherichia albertii strain KBSW50i     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2803362..2813991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6N69_RS13610 (N6N69_013610) helD 2803604..2805658 (-) 2055 WP_085456143.1 DNA helicase IV -
  N6N69_RS13615 (N6N69_013615) - 2805781..2806227 (+) 447 WP_001261228.1 YccF domain-containing protein -
  N6N69_RS13620 (N6N69_013620) yccS 2806237..2808402 (+) 2166 WP_072243810.1 YccS family putative transporter -
  N6N69_RS13625 (N6N69_013625) sxy/tfoX 2808362..2808991 (-) 630 WP_105227746.1 TfoX/Sxy family DNA transformation protein Regulator
  N6N69_RS13630 (N6N69_013630) sulA 2809209..2809718 (+) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  N6N69_RS13635 (N6N69_013635) ompA 2810074..2811126 (+) 1053 WP_024164823.1 porin OmpA -
  N6N69_RS13640 (N6N69_013640) matP 2811202..2811654 (-) 453 WP_000877164.1 macrodomain Ter protein MatP -
  N6N69_RS13645 (N6N69_013645) - 2811840..2813600 (+) 1761 WP_103053446.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24291.21 Da        Isoelectric Point: 9.0264

>NTDB_id=753440 N6N69_RS13625 WP_105227746.1 2808362..2808991(-) (sxy/tfoX) [Escherichia albertii strain KBSW50i]
MKSLSYKRLYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=753440 N6N69_RS13625 WP_105227746.1 2808362..2808991(-) (sxy/tfoX) [Escherichia albertii strain KBSW50i]
ATGAAAAGCCTCTCCTATAAGCGGCTCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAGGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAGATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.952

100

0.9