Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OMP39_RS14205 Genome accession   NZ_CP110257
Coordinates   3096836..3098194 (-) Length   452 a.a.
NCBI ID   WP_264892442.1    Uniprot ID   -
Organism   Schlegelella aquatica strain LMG 23380     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3091836..3103194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP39_RS14175 (OMP39_14175) - 3091983..3092804 (+) 822 WP_264892434.1 fumarylacetoacetate hydrolase family protein -
  OMP39_RS14180 (OMP39_14180) - 3092881..3093234 (+) 354 WP_264892435.1 DUF3147 family protein -
  OMP39_RS14185 (OMP39_14185) - 3093552..3093932 (+) 381 WP_264892437.1 VOC family protein -
  OMP39_RS14190 (OMP39_14190) - 3094148..3095581 (+) 1434 WP_264892439.1 prolyl oligopeptidase family serine peptidase -
  OMP39_RS14195 (OMP39_14195) - 3095598..3096290 (+) 693 WP_264892440.1 OmpW family outer membrane protein -
  OMP39_RS14200 (OMP39_14200) - 3096340..3096738 (-) 399 WP_264892441.1 hypothetical protein -
  OMP39_RS14205 (OMP39_14205) radA 3096836..3098194 (-) 1359 WP_264892442.1 DNA repair protein RadA Machinery gene
  OMP39_RS14210 (OMP39_14210) - 3098223..3098585 (-) 363 WP_264892444.1 hypothetical protein -
  OMP39_RS14215 (OMP39_14215) - 3098609..3099661 (-) 1053 WP_264892446.1 calcium/sodium antiporter -
  OMP39_RS14220 (OMP39_14220) - 3099726..3100745 (-) 1020 WP_264892447.1 hypothetical protein -
  OMP39_RS14225 (OMP39_14225) - 3100786..3101490 (-) 705 WP_264892449.1 TetR/AcrR family transcriptional regulator -
  OMP39_RS14230 (OMP39_14230) alr 3101487..3102593 (-) 1107 WP_264892451.1 alanine racemase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48090.57 Da        Isoelectric Point: 7.4412

>NTDB_id=753423 OMP39_RS14205 WP_264892442.1 3096836..3098194(-) (radA) [Schlegelella aquatica strain LMG 23380]
MAKEKTVYICTECGGTSPKWLGKCPHCNAWNTLEETVPESGSRHRFQALAKSSPVTTLAEIEASDVERVPTGIEELDRVL
GGGIVAGAVVLIGGDPGIGKSTLLLQALEALSRRMRTLYVTGEESGAQVALRARRLGLDGSGVRVQAEIQLEKILATVEV
EKPDVVVIDSIQTIYSEQLTSAPGSVAQVRECSAQLTRTAKATGAAMVLVGHVTKEGALAGPRVLEHIVDTVLYFEGDTH
SAFRLVRAFKNRFGAVNEIGVFAMTERGLKGVANPSAIFLSTHHEPVAGSCVLVTLEGTRPMLVEIQALVDNSPIPSPRR
LSVGLEQNRLAMLLAVMHRHAGIACYDQDVFVNAVGGVRISEPAADLAVMLAIQSSLRGRPLPRGFLTFGEVGLAGEVRP
APRGQERLKEAAKLGFSVAVVPKANAPKKPIEGLAIHPVERVEQAIDVVKGL

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=753423 OMP39_RS14205 WP_264892442.1 3096836..3098194(-) (radA) [Schlegelella aquatica strain LMG 23380]
ATGGCGAAGGAAAAGACCGTCTACATCTGCACCGAATGCGGCGGCACCAGCCCCAAGTGGCTGGGCAAGTGCCCGCACTG
CAACGCCTGGAACACACTGGAAGAGACCGTGCCGGAAAGCGGCTCGCGGCACCGCTTCCAGGCGCTCGCCAAGTCCAGCC
CCGTCACGACCCTGGCCGAGATCGAAGCTTCGGATGTCGAGCGCGTGCCCACCGGCATCGAGGAGCTGGACCGGGTGCTG
GGCGGCGGCATCGTGGCCGGCGCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACGTTGCTGCTCCAGGC
GCTCGAGGCCTTGTCCCGACGCATGAGGACGCTGTACGTGACGGGCGAGGAGTCGGGCGCGCAGGTGGCGCTGCGCGCAC
GGCGGCTCGGGCTCGACGGCTCGGGCGTGCGCGTGCAGGCCGAGATCCAGCTGGAGAAGATCCTCGCCACGGTCGAGGTG
GAGAAACCCGACGTCGTGGTGATCGACTCGATCCAGACCATCTACTCCGAGCAACTCACCTCGGCGCCGGGCTCGGTGGC
GCAGGTGCGCGAATGCTCGGCCCAGCTCACGCGCACGGCCAAAGCCACCGGTGCCGCGATGGTGCTGGTGGGGCACGTCA
CGAAGGAGGGCGCGCTCGCGGGGCCACGGGTGCTCGAGCACATCGTCGACACCGTGCTCTACTTCGAAGGCGACACGCAC
AGCGCTTTCCGGCTCGTGCGCGCGTTCAAGAATCGCTTCGGCGCGGTCAACGAGATCGGCGTCTTCGCAATGACGGAGCG
GGGCCTGAAGGGGGTGGCCAACCCGAGTGCAATTTTCCTGTCCACCCACCACGAGCCGGTGGCCGGCTCGTGCGTGTTGG
TCACGCTCGAGGGCACGCGGCCCATGCTGGTGGAGATCCAGGCCCTGGTGGACAACTCGCCGATCCCCAGCCCCCGGCGG
CTGAGCGTCGGCCTGGAGCAGAACCGGCTCGCGATGCTGCTGGCGGTGATGCACCGTCATGCGGGCATCGCCTGCTATGA
CCAGGACGTGTTCGTCAATGCGGTGGGCGGTGTGCGCATCAGCGAGCCGGCGGCGGACCTGGCGGTGATGCTCGCCATCC
AGAGCAGCTTGCGCGGCCGGCCCCTTCCCCGGGGCTTCCTCACCTTCGGCGAGGTGGGCTTGGCGGGCGAGGTGCGGCCG
GCACCGCGCGGGCAGGAGCGCTTGAAGGAGGCAGCCAAGCTGGGCTTCAGCGTGGCCGTGGTGCCGAAGGCGAACGCACC
GAAGAAGCCGATCGAGGGGCTCGCGATCCACCCGGTCGAGCGTGTGGAGCAGGCGATCGACGTCGTCAAAGGCCTCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.346

95.796

0.482
  radA Streptococcus mitis NCTC 12261

46.875

99.115

0.465
  radA Streptococcus pneumoniae Rx1

48.706

94.027

0.458
  radA Streptococcus pneumoniae D39

48.706

94.027

0.458
  radA Streptococcus pneumoniae R6

48.706

94.027

0.458
  radA Streptococcus pneumoniae TIGR4

48.706

94.027

0.458
  radA Streptococcus mitis SK321

48.706

94.027

0.458