Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OKW95_RS13185 Genome accession   NZ_CP110254
Coordinates   2799628..2800335 (+) Length   235 a.a.
NCBI ID   WP_004793675.1    Uniprot ID   A0AAJ1PDR6
Organism   Acinetobacter oleivorans strain S4     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2794628..2805335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW95_RS13165 (OKW95_13170) - 2797440..2798249 (+) 810 WP_198306759.1 peptidoglycan DD-metalloendopeptidase family protein -
  OKW95_RS13170 (OKW95_13175) - 2798246..2798671 (-) 426 WP_005299034.1 GNAT family N-acetyltransferase -
  OKW95_RS13175 (OKW95_13180) - 2798766..2799188 (-) 423 WP_005041936.1 OsmC family protein -
  OKW95_RS13180 (OKW95_13185) - 2799324..2799386 (-) 63 Protein_2572 hypothetical protein -
  OKW95_RS13185 (OKW95_13190) crp 2799628..2800335 (+) 708 WP_004793675.1 cAMP-activated global transcriptional regulator CRP Regulator
  OKW95_RS13190 (OKW95_13195) - 2800495..2801544 (+) 1050 WP_323739607.1 NADP(H)-dependent aldo-keto reductase -
  OKW95_RS13195 (OKW95_13200) - 2801601..2802383 (-) 783 WP_005299044.1 M48 family metallopeptidase -
  OKW95_RS13200 (OKW95_13205) - 2802499..2802816 (-) 318 WP_005299047.1 hypothetical protein -
  OKW95_RS13205 (OKW95_13210) - 2802936..2804255 (-) 1320 WP_049837777.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26521.16 Da        Isoelectric Point: 4.6625

>NTDB_id=753385 OKW95_RS13185 WP_004793675.1 2799628..2800335(+) (crp) [Acinetobacter oleivorans strain S4]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDVSLEEAPVSDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=753385 OKW95_RS13185 WP_004793675.1 2799628..2800335(+) (crp) [Acinetobacter oleivorans strain S4]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCGAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGATGACGAACGTGAAATTGTTGTTGCGTATTTGAATCCGGGCGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACTCGTGATGTCTGTGAAATTGCAGA
AATTTCTTATGACAACTTCCACGAACTTAGCAAGCAATATCCGGACTTAAGTTATGCTGTTTTTGCACAACTTGTTCGCC
GTCTAAAAAATACAACTCGTAAAATGACAGATCTTGCGTTTATTGATGTGTCTGGCCGTATTGCACGTTGTTTAATCGAC
TTATCTTCACAGCCAGAAGCAATGATTTTGCCAAACGGTCGTCAAATTCGTATTACTCGTCAAGAAATTGGCCGTATTGT
GGGATGTTCACGTGAAATGGTTGGCCGTGTACTCAAGACCTTAGAAGATCAAGGCATGATCCAGACAGACGGTAAAGCTA
TTCTTATTTTTGATGTTTCATTAGAAGAAGCACCTGTTTCTGATGAAGACTATGATGATGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-219)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

98.298

100

0.983
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

48.705

82.128

0.4