Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OL235_RS02760 Genome accession   NZ_CP110237
Coordinates   601549..603228 (+) Length   559 a.a.
NCBI ID   WP_275469649.1    Uniprot ID   A0AAF0CVX0
Organism   Vagococcus intermedius strain STAA25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 596549..608228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OL235_RS02730 (OL235_02730) folD 596880..597719 (+) 840 WP_275469643.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  OL235_RS02735 (OL235_02735) xseA 597729..599075 (+) 1347 WP_275469644.1 exodeoxyribonuclease VII large subunit -
  OL235_RS02740 (OL235_02740) - 599077..599307 (+) 231 WP_275469645.1 exodeoxyribonuclease VII small subunit -
  OL235_RS02745 (OL235_02745) - 599310..600203 (+) 894 WP_275469646.1 polyprenyl synthetase family protein -
  OL235_RS02750 (OL235_02750) - 600223..601059 (+) 837 WP_275469647.1 TlyA family RNA methyltransferase -
  OL235_RS02755 (OL235_02755) - 601082..601537 (+) 456 WP_275469648.1 arginine repressor -
  OL235_RS02760 (OL235_02760) recN 601549..603228 (+) 1680 WP_275469649.1 DNA repair protein RecN Machinery gene
  OL235_RS02765 (OL235_02765) - 603264..603377 (-) 114 WP_275469650.1 DUF4044 domain-containing protein -
  OL235_RS02770 (OL235_02770) - 603465..604421 (-) 957 WP_275469651.1 magnesium transporter CorA family protein -
  OL235_RS02775 (OL235_02775) - 604674..605042 (+) 369 WP_275469652.1 DUF3397 domain-containing protein -
  OL235_RS02780 (OL235_02780) mraZ 605186..605617 (+) 432 WP_275469653.1 division/cell wall cluster transcriptional repressor MraZ -
  OL235_RS02785 (OL235_02785) rsmH 605642..606619 (+) 978 WP_275469654.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  OL235_RS02790 (OL235_02790) ftsL 606612..606989 (+) 378 WP_275469655.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 62914.29 Da        Isoelectric Point: 4.5184

>NTDB_id=753320 OL235_RS02760 WP_275469649.1 601549..603228(+) (recN) [Vagococcus intermedius strain STAA25]
MLQELAIENFAIISSLQVSFGEGMTTLTGETGAGKSIIIDAVGLLMGGRGSTDYIRQGATKCLLEGQFIVGKANKLPLLL
EELSIDLTDGTVIISREINQSGKNVCRVNGRLVNTTVLREIGTYLVDIHGQNEHQELMQADHHLNLLDQYASDQLPNLKE
TYKQIYQSYKKTLKRVKNKQTNEKEFAQRLDMLTFQSQEIESADLRIGEESELKEERQRLANYHKVMAALNNTYDALSGG
ETSSLDGVGFAMNEMMDIENLATEYSDISETIKNSYYQLQEVANEALRCVDALEVDEGRLDEIETRLDVIRQLKRKYGES
EEQILSYWQEINEELLASTQFEQQNEQLEKELATLETALIKAADELSLERKKVARKLEEAILKELAELYLEKTLFEVRFF
ESDNPIYQESGQDSVEFYITTNPGEPLKPLVKVASGGELSRVMLALKTIFSQLHGMTSIVFDEVDTGVSGRVAQAIANKI
HQISQRSQVLCITHLPQVAAVADTQYYIEKNIVGERTETSLYLLTHDERVLEVGRMLAGDEITPLTIEHAKELLALAKK

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=753320 OL235_RS02760 WP_275469649.1 601549..603228(+) (recN) [Vagococcus intermedius strain STAA25]
TTGTTACAAGAATTAGCAATTGAAAATTTTGCGATTATTTCGTCGCTACAAGTTTCATTTGGTGAGGGGATGACGACACT
TACCGGAGAGACCGGCGCTGGAAAATCGATCATTATTGATGCGGTTGGTCTTTTGATGGGTGGCAGAGGGTCTACTGATT
ATATTAGGCAAGGCGCTACTAAATGTTTATTAGAAGGACAGTTTATAGTAGGTAAAGCTAATAAGTTACCACTACTATTG
GAAGAACTTTCAATTGATTTAACCGATGGTACGGTGATCATTTCGCGTGAAATAAATCAAAGTGGTAAAAATGTTTGTCG
AGTAAATGGCCGCTTGGTCAATACAACAGTTTTACGTGAAATTGGTACGTATTTAGTCGACATTCACGGTCAAAATGAGC
ATCAAGAATTAATGCAAGCTGACCATCATTTAAATTTGCTAGATCAATACGCCTCTGACCAGTTGCCAAACTTAAAAGAA
ACCTATAAACAAATTTATCAATCCTATAAAAAAACTTTAAAACGTGTTAAAAATAAGCAAACGAATGAAAAGGAGTTTGC
TCAGCGACTAGATATGCTTACTTTTCAATCACAAGAAATCGAATCAGCAGATTTAAGAATTGGGGAAGAAAGCGAATTAA
AAGAAGAGCGTCAGCGTTTGGCTAATTATCATAAAGTGATGGCAGCGTTGAATAATACTTACGATGCTTTATCAGGCGGT
GAAACAAGTAGTTTAGATGGTGTCGGATTTGCTATGAATGAAATGATGGATATTGAAAATTTAGCAACAGAATATTCAGA
TATTTCGGAAACTATTAAAAATAGTTATTACCAATTGCAAGAAGTCGCTAATGAGGCATTGCGTTGTGTGGATGCTTTAG
AAGTCGATGAGGGACGTTTAGATGAAATTGAAACGCGTTTGGATGTGATTCGTCAACTTAAGCGTAAGTATGGGGAGTCG
GAAGAACAAATCCTCAGTTATTGGCAGGAGATTAATGAAGAATTATTAGCCTCAACCCAATTCGAGCAACAAAATGAGCA
ATTGGAAAAAGAATTAGCGACATTGGAAACGGCCTTAATTAAAGCGGCGGATGAATTAAGTCTTGAACGAAAAAAAGTTG
CCCGCAAATTGGAGGAAGCTATTTTAAAAGAGTTAGCAGAACTTTATCTTGAAAAGACGCTGTTTGAAGTTCGCTTTTTT
GAATCTGATAATCCAATCTATCAAGAAAGTGGACAAGATAGTGTTGAATTTTATATCACGACAAATCCAGGAGAGCCACT
AAAACCCTTAGTTAAAGTTGCCTCAGGAGGCGAATTATCTCGAGTGATGTTGGCGCTTAAAACTATTTTTTCACAATTAC
ATGGAATGACTAGTATTGTCTTTGATGAGGTAGATACAGGAGTTAGTGGTAGAGTGGCACAAGCCATTGCTAATAAAATT
CATCAAATTTCACAGCGTTCGCAAGTTTTATGTATTACCCATCTCCCTCAGGTAGCAGCTGTAGCTGATACACAATATTA
TATTGAAAAAAATATTGTAGGGGAGCGTACAGAAACGTCACTGTATTTATTAACACATGACGAGCGAGTCTTGGAAGTAG
GGCGAATGTTAGCTGGAGATGAAATTACACCGTTAACAATTGAACATGCCAAAGAACTTTTGGCGTTAGCCAAAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.947

100

0.499