Detailed information NTG0753309

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QC817_RS05065
• Genome accession: NZ_CP123963
• Coordinates: 1024668..1025660 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain L6-21
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1019668..1030660

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QC817_RS05035 (QC817_05035)	ispD	1019729..1020439 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QC817_RS05040 (QC817_05040)	ispF	1020439..1020918 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QC817_RS05045 (QC817_05045)	truD	1020915..1021964 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QC817_RS05050 (QC817_05050)	surE	1021945..1022706 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QC817_RS05055 (QC817_05055)	pcm	1022700..1023326 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QC817_RS05060 (QC817_05060)	nlpD	1023511..1024605 (+)	1095	WP_308239966.1	murein hydrolase activator NlpD	-
QC817_RS05065 (QC817_05065)	rpoS	1024668..1025660 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QC817_RS05070 (QC817_05070)	ygbN	1025754..1027118 (-)	1365	WP_000104429.1	GntP family transporter	-
QC817_RS05075 (QC817_05075)	ygbM	1027207..1027983 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
QC817_RS05080 (QC817_05080)	ygbL	1027988..1028626 (-)	639	WP_001278994.1	aldolase	-
QC817_RS05085 (QC817_05085)	otnK	1028623..1029885 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=753309 QC817_RS05065 WP_000081550.1 1024668..1025660(+) (rpoS) [Escherichia coli strain L6-21]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=753309 QC817_RS05065 WP_000081550.1 1024668..1025660(+) (rpoS) [Escherichia coli strain L6-21]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715