Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OL234_RS09740 Genome accession   NZ_CP110232
Coordinates   2091654..2092601 (-) Length   315 a.a.
NCBI ID   WP_275469030.1    Uniprot ID   A0AAF0CUR0
Organism   Vagococcus intermedius strain STAA11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2086654..2097601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OL234_RS09720 (OL234_09720) - 2088177..2088794 (-) 618 WP_275470152.1 DUF1054 family protein -
  OL234_RS09725 (OL234_09725) - 2088903..2089871 (-) 969 WP_275469027.1 siderophore ABC transporter substrate-binding protein -
  OL234_RS09730 (OL234_09730) - 2089925..2090686 (-) 762 WP_275469028.1 ABC transporter ATP-binding protein -
  OL234_RS09735 (OL234_09735) - 2090683..2091657 (-) 975 WP_275469029.1 iron chelate uptake ABC transporter family permease subunit -
  OL234_RS09740 (OL234_09740) ceuB 2091654..2092601 (-) 948 WP_275469030.1 ABC transporter permease Machinery gene
  OL234_RS09745 (OL234_09745) - 2092829..2093299 (+) 471 WP_275469031.1 YueI family protein -
  OL234_RS09750 (OL234_09750) dinB 2093331..2094443 (-) 1113 WP_275469032.1 DNA polymerase IV -
  OL234_RS09755 (OL234_09755) udk 2094548..2095177 (-) 630 WP_275469033.1 uridine kinase -
  OL234_RS09760 (OL234_09760) - 2095283..2096062 (-) 780 WP_275469034.1 pseudouridine synthase -
  OL234_RS09765 (OL234_09765) - 2096148..2096582 (-) 435 WP_275469035.1 hypothetical protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34591.63 Da        Isoelectric Point: 9.8030

>NTDB_id=753304 OL234_RS09740 WP_275469030.1 2091654..2092601(-) (ceuB) [Vagococcus intermedius strain STAA11]
MKKWTLMLILLVLAISSLFIGVQSIEIRNIFQLDETQKLVLWSTRIPRTICLIIAGATSSVCGLIMQHLTQNKFVSPTTA
GTMDSARLGILVAMVFFPNNSMLVRSGVAFLFAFLGTMLFIQLIQRLPQKNQVMVPLIGLMFGNIIGSVVTFFAYQLQLV
QNMSSWLQGNFATISRGGYELIYLTVPLLILAYFYAYHFTIAGMGRDMATGIGLNYQWIQLFGLGIVSLASSVILVTIGG
LPFLGVIIPNIISLYYGDQMKQTLWLTAGAGSCFLIVCDIISRLVVQPYEVPVSLVVGVIGSIIFIALLLKGAKK

Nucleotide


Download         Length: 948 bp        

>NTDB_id=753304 OL234_RS09740 WP_275469030.1 2091654..2092601(-) (ceuB) [Vagococcus intermedius strain STAA11]
TTGAAAAAATGGACGCTAATGTTAATCCTTTTAGTATTAGCAATTAGTTCGTTATTTATAGGAGTTCAAAGTATTGAAAT
TAGAAACATTTTTCAGTTAGATGAGACACAGAAACTCGTTTTATGGAGTACTCGTATTCCACGGACGATCTGCTTAATTA
TTGCGGGAGCGACAAGTAGCGTCTGTGGCTTAATCATGCAGCACTTAACACAAAATAAATTCGTATCACCTACAACAGCA
GGAACGATGGATAGTGCTCGCTTAGGAATACTAGTGGCAATGGTTTTTTTTCCTAATAATTCGATGTTAGTTCGATCAGG
CGTTGCTTTTTTATTTGCTTTTTTAGGAACGATGTTATTTATTCAATTAATTCAACGTTTGCCACAAAAAAATCAAGTGA
TGGTACCATTAATAGGATTGATGTTTGGAAACATCATCGGCTCAGTTGTAACATTTTTCGCGTACCAATTACAGTTGGTA
CAAAATATGTCATCATGGTTACAAGGTAACTTTGCTACGATTTCACGTGGGGGCTATGAGTTAATTTATTTAACAGTTCC
CTTATTAATCTTGGCTTACTTTTATGCGTATCATTTTACTATTGCTGGTATGGGACGAGACATGGCAACAGGAATTGGCT
TAAATTATCAATGGATTCAACTGTTTGGTTTGGGCATTGTATCGCTAGCTAGTAGTGTGATTTTAGTGACAATTGGTGGC
TTACCATTTTTAGGGGTCATCATTCCAAATATTATTTCATTGTACTACGGTGATCAAATGAAACAAACACTCTGGCTAAC
GGCTGGAGCCGGTAGTTGTTTCTTAATTGTGTGTGATATTATTTCCCGTTTAGTCGTACAACCATATGAAGTTCCAGTTA
GTTTAGTGGTTGGAGTAATAGGTAGTATCATTTTTATCGCGTTACTATTAAAGGGGGCTAAGAAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.307

97.143

0.498