Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   OL240_RS09330 Genome accession   NZ_CP110231
Coordinates   2063548..2063832 (-) Length   94 a.a.
NCBI ID   WP_264918061.1    Uniprot ID   -
Organism   Selenomonas sputigena strain KCOM 20461     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2058548..2068832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OL240_RS09310 (OL240_09310) - 2058793..2059734 (-) 942 WP_264918057.1 Rpn family recombination-promoting nuclease/putative transposase -
  OL240_RS09315 (OL240_09315) - 2059801..2061171 (-) 1371 WP_264918058.1 NCS2 family permease -
  OL240_RS09320 (OL240_09320) - 2061824..2062732 (+) 909 WP_264918059.1 hypothetical protein -
  OL240_RS09325 (OL240_09325) - 2063087..2063461 (+) 375 WP_264918060.1 DUF488 domain-containing protein -
  OL240_RS09330 (OL240_09330) HI0659 2063548..2063832 (-) 285 WP_264918061.1 helix-turn-helix domain-containing protein Machinery gene
  OL240_RS09335 (OL240_09335) - 2063982..2064431 (-) 450 WP_264918062.1 hypothetical protein -
  OL240_RS09340 (OL240_09340) - 2064594..2065247 (-) 654 WP_264918063.1 CBS and ACT domain-containing protein -
  OL240_RS09345 (OL240_09345) - 2065297..2066013 (-) 717 WP_264918064.1 ABC transporter ATP-binding protein -
  OL240_RS09350 (OL240_09350) - 2066016..2066783 (-) 768 WP_006193556.1 ABC transporter ATP-binding protein -
  OL240_RS09355 (OL240_09355) - 2066776..2067729 (-) 954 WP_264918068.1 branched-chain amino acid ABC transporter permease -
  OL240_RS09360 (OL240_09360) - 2067737..2068624 (-) 888 WP_013740593.1 branched-chain amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10347.95 Da        Isoelectric Point: 5.8618

>NTDB_id=753272 OL240_RS09330 WP_264918061.1 2063548..2063832(-) (HI0659) [Selenomonas sputigena strain KCOM 20461]
MMNSAIAGTWEEWEKSHFTPEEIAESNLRVALIGELIKARNERGVTQKQLEEMSGVSQPVIARLERGTTSSNISTVMKLL
APLGKKLAIVPLES

Nucleotide


Download         Length: 285 bp        

>NTDB_id=753272 OL240_RS09330 WP_264918061.1 2063548..2063832(-) (HI0659) [Selenomonas sputigena strain KCOM 20461]
ATGATGAACTCTGCTATTGCAGGCACTTGGGAAGAATGGGAAAAATCCCACTTTACCCCCGAAGAAATCGCCGAGAGCAA
TCTGCGCGTCGCCTTGATCGGCGAACTCATCAAGGCGAGGAATGAGCGGGGCGTCACGCAGAAGCAGCTCGAAGAGATGA
GCGGCGTCAGCCAGCCTGTCATTGCACGCTTGGAGCGCGGCACGACGAGTTCGAACATCTCGACCGTCATGAAGCTTCTC
GCTCCCTTGGGCAAGAAGCTTGCCATCGTTCCCTTGGAAAGCTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

58.427

94.681

0.553