Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OL240_RS02025 Genome accession   NZ_CP110231
Coordinates   443629..444552 (-) Length   307 a.a.
NCBI ID   WP_006193029.1    Uniprot ID   C9LW81
Organism   Selenomonas sputigena strain KCOM 20461     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 438629..449552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OL240_RS02010 (OL240_02010) pepD 439369..440817 (-) 1449 WP_264919102.1 beta-Ala-His dipeptidase -
  OL240_RS02015 (OL240_02015) - 440928..441488 (-) 561 WP_264919103.1 cell division protein SepF -
  OL240_RS02020 (OL240_02020) typA 441688..443505 (-) 1818 WP_264919104.1 translational GTPase TypA -
  OL240_RS02025 (OL240_02025) pilA 443629..444552 (-) 924 WP_006193029.1 signal recognition particle-docking protein FtsY Machinery gene
  OL240_RS02030 (OL240_02030) smc 444580..448125 (-) 3546 WP_264919105.1 chromosome segregation protein SMC -
  OL240_RS02035 (OL240_02035) - 448160..449065 (-) 906 WP_264919106.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 33172.30 Da        Isoelectric Point: 5.5334

>NTDB_id=753268 OL240_RS02025 WP_006193029.1 443629..444552(-) (pilA) [Selenomonas sputigena strain KCOM 20461]
MGFFDRLKKGLAKTRETFTNKIEKLIIGYADIDDDLLDELEETLIMSDVGVKTTERLMADVRKGIKKKDINTPEDLKPFL
AEKISEILSTGSDETRIASAGPTVLLVIGVNGVGKTTTIGKLAAYYKEQGKSVMLAAADTFRAAAIDQLQIWGDRTGVPV
IRHEEGSDPAAVAFDAVKAARARSIDVLIIDTAGRLHTKSNLMEELKKINRVIQREIAEAPHETLLVLDATTGQNAISQA
DLFQKAAAITGIVLTKLDGTAKGGVIIGLKSELSMPVKWIGVGEGVDDLRPFIAKDFARALFGLNAE

Nucleotide


Download         Length: 924 bp        

>NTDB_id=753268 OL240_RS02025 WP_006193029.1 443629..444552(-) (pilA) [Selenomonas sputigena strain KCOM 20461]
ATGGGATTTTTTGACCGATTGAAAAAGGGGCTTGCCAAGACGCGCGAGACCTTTACGAACAAGATTGAAAAACTCATCAT
CGGCTATGCAGATATTGATGACGATCTTCTCGATGAGCTGGAGGAAACTCTGATCATGTCCGATGTCGGCGTGAAGACGA
CGGAAAGACTCATGGCAGATGTGCGAAAGGGCATCAAGAAGAAAGACATCAATACGCCGGAAGATTTGAAGCCCTTCCTC
GCTGAGAAGATTTCCGAAATCCTTTCAACAGGTTCGGACGAAACGCGTATCGCTTCGGCAGGGCCTACGGTGCTCCTCGT
CATCGGCGTCAACGGCGTCGGCAAGACGACGACGATCGGCAAGCTCGCCGCCTACTACAAGGAGCAGGGCAAGTCCGTTA
TGCTCGCTGCCGCCGACACCTTCCGCGCTGCCGCCATCGATCAGCTGCAGATCTGGGGCGATCGCACGGGGGTTCCTGTC
ATTCGCCACGAGGAAGGATCCGATCCTGCCGCCGTCGCCTTCGATGCGGTCAAGGCAGCGAGGGCGCGCAGCATCGACGT
CTTGATCATTGATACGGCGGGGCGTCTGCATACGAAATCGAACCTCATGGAAGAGCTGAAGAAGATCAATCGTGTGATCC
AGCGCGAGATTGCTGAGGCGCCGCATGAGACGCTGCTCGTCCTCGATGCGACGACGGGGCAGAATGCGATCAGTCAGGCA
GATCTCTTTCAAAAAGCGGCGGCAATCACGGGCATCGTTCTGACGAAGCTTGACGGAACGGCGAAGGGCGGTGTCATCAT
CGGCCTGAAGTCGGAGCTTTCCATGCCGGTGAAATGGATTGGCGTCGGCGAGGGAGTCGACGATCTGCGCCCGTTCATCG
CCAAGGATTTCGCGCGCGCCCTCTTCGGGCTGAATGCGGAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(102-302)

SRP54-type protein, helical bundle domain (SRP54_N)

(19-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9LW81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.175

98.697

0.485