Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OM944_RS12330 Genome accession   NZ_CP110226
Coordinates   3023760..3024224 (+) Length   154 a.a.
NCBI ID   WP_264807921.1    Uniprot ID   -
Organism   Algoriphagus halophytocola strain TR-M5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3018760..3029224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM944_RS12310 (OM944_12310) - 3019587..3021158 (-) 1572 WP_264807917.1 Rne/Rng family ribonuclease -
  OM944_RS12315 (OM944_12315) - 3021341..3022168 (-) 828 WP_264807918.1 M48 family metallopeptidase -
  OM944_RS12320 (OM944_12320) - 3022187..3022495 (-) 309 WP_264807919.1 HU family DNA-binding protein -
  OM944_RS12325 (OM944_12325) mutY 3022641..3023711 (+) 1071 WP_264807920.1 A/G-specific adenine glycosylase -
  OM944_RS12330 (OM944_12330) ssb 3023760..3024224 (+) 465 WP_264807921.1 single-stranded DNA-binding protein Machinery gene
  OM944_RS12335 (OM944_12335) gldE 3024295..3025644 (+) 1350 WP_264807922.1 gliding motility-associated protein GldE -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16680.41 Da        Isoelectric Point: 4.7884

>NTDB_id=753210 OM944_RS12330 WP_264807921.1 3023760..3024224(+) (ssb) [Algoriphagus halophytocola strain TR-M5]
MAGVNKVILVGNLGADPEVKYLEGDNVVANLRLATTEAYKNRNGERVEQTEWHDLELWGGQAKVAEQYLKKGSQIYVEGK
IKTDSWQDEQGQNRYRTRIRVLSFTMLGSRPDGAGGGGGSAPQQSYQPKPNAAAAATPSSPAPATDTDDDDLPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=753210 OM944_RS12330 WP_264807921.1 3023760..3024224(+) (ssb) [Algoriphagus halophytocola strain TR-M5]
ATGGCAGGAGTTAATAAAGTAATCTTGGTAGGCAATCTAGGTGCAGATCCAGAAGTGAAGTATCTGGAAGGTGACAATGT
GGTCGCAAATCTACGTCTAGCCACCACTGAAGCCTATAAAAACCGGAATGGCGAGCGCGTGGAGCAAACAGAGTGGCATG
ACCTAGAGCTCTGGGGAGGCCAGGCCAAAGTCGCAGAGCAATACCTCAAAAAAGGCAGCCAGATCTACGTCGAAGGCAAA
ATCAAAACCGATAGCTGGCAGGATGAGCAGGGACAAAACCGCTACCGCACTAGAATCAGGGTTTTGAGCTTTACCATGCT
GGGTAGCAGACCAGACGGAGCAGGAGGCGGAGGAGGATCAGCTCCTCAGCAGTCTTATCAGCCAAAACCGAATGCAGCGG
CCGCCGCTACCCCTTCCTCACCGGCACCGGCCACAGACACGGATGATGACGACCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

41.848

100

0.5
  ssb Vibrio cholerae strain A1552

41.954

100

0.474
  ssb Neisseria gonorrhoeae MS11

40.698

100

0.455
  ssb Neisseria meningitidis MC58

40.116

100

0.448