Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OLL86_RS06405 Genome accession   NZ_CP110225
Coordinates   1369547..1370008 (-) Length   153 a.a.
NCBI ID   WP_039148357.1    Uniprot ID   A0A0A2Y1P5
Organism   Gallibacterium anatis strain IMT49310     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1364547..1375008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLL86_RS06375 (OLL86_06375) - 1365055..1365327 (-) 273 WP_264779685.1 GNAT family N-acetyltransferase -
  OLL86_RS06380 (OLL86_06380) yacG 1365413..1365631 (-) 219 WP_018345915.1 DNA gyrase inhibitor YacG -
  OLL86_RS06385 (OLL86_06385) coaE 1365621..1366253 (-) 633 WP_264779686.1 dephospho-CoA kinase -
  OLL86_RS06390 (OLL86_06390) - 1366268..1366900 (-) 633 WP_264779687.1 prepilin peptidase -
  OLL86_RS06395 (OLL86_06395) - 1366897..1368105 (-) 1209 WP_264779688.1 type II secretion system F family protein -
  OLL86_RS06400 (OLL86_06400) pilB 1368121..1369530 (-) 1410 WP_264779689.1 GspE/PulE family protein Machinery gene
  OLL86_RS06405 (OLL86_06405) pilA 1369547..1370008 (-) 462 WP_039148357.1 prepilin peptidase-dependent pilin Machinery gene
  OLL86_RS06410 (OLL86_06410) ampD 1370113..1370667 (+) 555 WP_264779690.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OLL86_RS06415 (OLL86_06415) - 1370754..1371089 (+) 336 WP_013746603.1 hypothetical protein -
  OLL86_RS06420 (OLL86_06420) - 1371198..1372592 (+) 1395 WP_264779691.1 chloride channel protein -
  OLL86_RS06425 (OLL86_06425) dusA 1372573..1373553 (+) 981 WP_264779692.1 tRNA dihydrouridine(20/20a) synthase DusA -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16374.72 Da        Isoelectric Point: 8.0868

>NTDB_id=753192 OLL86_RS06405 WP_039148357.1 1369547..1370008(-) (pilA) [Gallibacterium anatis strain IMT49310]
MKKREQLKANYAGFTLIELMIVIAIIAVLATIAIPSYQNYTKKAAISELIQASSPYKAEVELCIYNTKSKASCNAGQNGI
QAKPSNMDKFKYLKEVNVAAGVISVSGKSSLENISYTMTPSDGNNGELIDWSVTCSGDNGLFPAGFCSNTSAN

Nucleotide


Download         Length: 462 bp        

>NTDB_id=753192 OLL86_RS06405 WP_039148357.1 1369547..1370008(-) (pilA) [Gallibacterium anatis strain IMT49310]
ATGAAAAAACGTGAACAACTTAAGGCGAATTATGCCGGATTTACTTTAATCGAATTGATGATTGTCATTGCGATTATTGC
CGTGTTGGCAACCATTGCCATTCCCTCTTATCAAAATTACACCAAAAAGGCGGCAATATCAGAATTGATTCAAGCCTCTT
CACCCTATAAGGCGGAAGTTGAACTCTGTATTTATAACACCAAGAGTAAAGCAAGCTGTAACGCCGGTCAAAACGGCATT
CAGGCGAAGCCGTCTAATATGGATAAATTTAAATATCTTAAAGAGGTTAATGTGGCTGCTGGTGTTATTTCTGTTTCCGG
TAAATCCAGTCTGGAGAACATCAGTTATACGATGACACCGAGTGACGGCAATAACGGTGAATTAATTGATTGGAGTGTAA
CTTGTAGCGGTGATAATGGGCTGTTTCCGGCAGGATTTTGTAGCAATACTTCTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2Y1P5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

54

98.039

0.529
  pilA Haemophilus influenzae Rd KW20

52.667

98.039

0.516
  pilA Haemophilus influenzae 86-028NP

56.618

88.889

0.503