Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QGM68_RS19335 Genome accession   NZ_CP123951
Coordinates   4012950..4013579 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain TL012     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4007950..4018579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGM68_RS19320 (QGM68_19320) helD 4008192..4010246 (-) 2055 WP_001295354.1 DNA helicase IV -
  QGM68_RS19325 (QGM68_19325) yccF 4010369..4010815 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QGM68_RS19330 (QGM68_19330) yccS 4010825..4012987 (+) 2163 WP_000875061.1 YccS family putative transporter -
  QGM68_RS19335 (QGM68_19335) sxy/tfoX 4012950..4013579 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QGM68_RS19340 (QGM68_19340) sulA 4013798..4014307 (+) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  QGM68_RS19345 (QGM68_19345) ompA 4014664..4015704 (+) 1041 WP_000750416.1 porin OmpA -
  QGM68_RS19350 (QGM68_19350) matP 4015780..4016232 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QGM68_RS19355 (QGM68_19355) ycbZ 4016418..4018178 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=753172 QGM68_RS19335 WP_000839153.1 4012950..4013579(-) (sxy/tfoX) [Escherichia coli strain TL012]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=753172 QGM68_RS19335 WP_000839153.1 4012950..4013579(-) (sxy/tfoX) [Escherichia coli strain TL012]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1