Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OLD84_RS10635 Genome accession   NZ_CP110224
Coordinates   2037570..2039324 (-) Length   584 a.a.
NCBI ID   WP_209462885.1    Uniprot ID   -
Organism   Virgibacillus natechei strain DSM 25609     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2032570..2044324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLD84_RS10615 (OLD84_10615) - 2033172..2033411 (+) 240 WP_209462881.1 DUF2627 family protein -
  OLD84_RS10620 (OLD84_10620) - 2033499..2034848 (+) 1350 WP_209462882.1 aspartate kinase -
  OLD84_RS10625 (OLD84_10625) spo0A 2035010..2035789 (-) 780 WP_209462883.1 sporulation transcription factor Spo0A -
  OLD84_RS10630 (OLD84_10630) spoIVB 2036026..2037327 (-) 1302 WP_209462884.1 SpoIVB peptidase -
  OLD84_RS10635 (OLD84_10635) recN 2037570..2039324 (-) 1755 WP_209462885.1 DNA repair protein RecN Machinery gene
  OLD84_RS10640 (OLD84_10640) ahrC 2039353..2039802 (-) 450 WP_209462886.1 transcriptional regulator AhrC/ArgR -
  OLD84_RS10645 (OLD84_10645) - 2039865..2040692 (-) 828 WP_209462887.1 TlyA family RNA methyltransferase -
  OLD84_RS10650 (OLD84_10650) - 2040717..2041310 (-) 594 WP_209462888.1 hypothetical protein -
  OLD84_RS10655 (OLD84_10655) - 2041988..2042872 (-) 885 WP_264917115.1 polyprenyl synthetase family protein -
  OLD84_RS10660 (OLD84_10660) xseB 2042875..2043105 (-) 231 WP_209462889.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 66500.10 Da        Isoelectric Point: 5.0505

>NTDB_id=753166 OLD84_RS10635 WP_209462885.1 2037570..2039324(-) (recN) [Virgibacillus natechei strain DSM 25609]
MLTELSIRDFAIIDEVSITFNEGLTVLTGETGAGKSIIIDAVQLLAGGRGSIDYVRHGAKKAEIEGLFTIDNKNHPIYHV
GSQYGIEIPGEQLVLQRTITANGKSICRVNSKLVTLAILKEFGKKLIDIHSQHETQSLMDPENHIELLDMYDPEPISKAK
EEYTDLFNKLSSLKARYKKFSENEQEMAHRLDLLQFQMKELEQANLVPNEDDDLEEERTSLANYEKIHHALQDAYNALYG
EQKGLEWLNQAQLALQDSSSYDPFIAQKAEEVSSNYFVLEELTYDLRNHIESLQYSPDRLNEIESRLNEINRLKKKYGAT
VNDILEYMAKIEEEIEEITNKDSHLSHLAQQINETAKDVYLEAKQLHDIRRKASESLMKAIHEELKELYLEKASFSISFD
HKQNEQAIHDDDYMSIDLHKNGFDRIRFLISTNTGEPLKPLNKVASGGELSRIMLVLKNIFAKHQGVTSVIFDEVDTGVS
GRVAQAMAEKIFQISSDSQVLCITHLPQVAAMADTHKFIEKREGKNRTATIVSELPMEDQVEELSRMITGTELTDTAKEH
GRELLDLASIFKKNKDKNNKKSRY

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=753166 OLD84_RS10635 WP_209462885.1 2037570..2039324(-) (recN) [Virgibacillus natechei strain DSM 25609]
ATGCTAACGGAATTGTCTATTCGTGATTTTGCTATTATTGATGAGGTGTCTATTACGTTTAATGAGGGGCTTACTGTATT
GACAGGAGAAACTGGTGCAGGTAAGTCAATAATTATTGATGCGGTTCAATTATTAGCAGGTGGACGAGGATCTATAGATT
ATGTAAGACATGGAGCCAAAAAAGCTGAAATAGAAGGGCTATTCACAATCGATAATAAAAACCATCCAATTTATCATGTA
GGTAGTCAATATGGGATCGAAATACCGGGTGAACAGTTGGTTTTACAGCGAACCATAACTGCAAACGGAAAAAGTATATG
CAGAGTTAATAGTAAATTGGTAACGTTGGCGATTTTAAAAGAATTTGGTAAGAAACTTATTGATATACATAGTCAGCATG
AAACGCAATCACTAATGGATCCAGAAAATCATATTGAATTACTGGATATGTATGATCCAGAACCAATATCAAAAGCTAAA
GAAGAATATACAGATTTATTTAATAAACTCTCCTCCTTAAAAGCACGATATAAAAAATTTAGTGAAAATGAGCAAGAGAT
GGCTCATCGTCTCGATTTACTGCAATTTCAAATGAAAGAGCTCGAACAGGCCAACCTGGTGCCTAATGAAGATGACGATC
TAGAAGAAGAAAGAACGTCCTTAGCTAATTATGAAAAGATACATCATGCACTCCAAGACGCATACAATGCCTTATACGGT
GAACAAAAAGGACTGGAATGGTTGAACCAGGCTCAACTTGCCCTACAAGACAGTAGTAGTTATGATCCGTTTATTGCCCA
AAAAGCTGAAGAGGTCTCCAGTAATTATTTTGTTCTTGAAGAATTAACGTATGATTTACGTAATCATATTGAAAGTCTTC
AATACAGTCCTGATCGTTTAAATGAAATAGAGTCACGATTGAATGAAATAAACAGGTTGAAAAAGAAATATGGTGCAACA
GTAAACGATATCCTTGAATATATGGCAAAAATCGAGGAAGAGATTGAAGAAATAACGAATAAAGATTCCCACTTATCTCA
TTTGGCTCAGCAAATAAATGAAACCGCTAAGGATGTATATTTAGAAGCAAAGCAACTGCATGACATTCGTCGAAAAGCCT
CTGAATCATTAATGAAAGCTATACATGAAGAGTTAAAAGAACTATATTTGGAGAAAGCATCATTTTCTATTTCATTTGAT
CATAAACAAAATGAACAAGCTATCCATGACGATGATTATATGTCCATAGATTTACATAAAAATGGATTTGATCGTATTCG
ATTTTTAATATCTACAAACACAGGTGAACCATTAAAACCTTTAAATAAAGTAGCATCAGGCGGAGAACTTTCACGAATCA
TGCTTGTACTTAAAAATATTTTTGCTAAGCATCAAGGTGTTACGAGTGTTATTTTTGATGAAGTAGATACGGGTGTAAGT
GGGCGTGTAGCACAAGCAATGGCGGAAAAAATATTTCAAATATCAAGCGACTCCCAAGTGTTATGTATTACGCATCTACC
GCAAGTTGCTGCAATGGCTGATACGCACAAATTCATCGAAAAGCGTGAAGGAAAGAATCGTACAGCAACAATTGTGTCTG
AATTACCAATGGAAGACCAAGTTGAAGAATTAAGCAGAATGATTACAGGAACAGAATTAACGGATACAGCAAAAGAGCAT
GGAAGAGAACTACTCGACTTAGCATCTATTTTTAAAAAAAATAAGGATAAAAATAATAAAAAATCCAGATACTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.065

97.774

0.519