Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OLD84_RS03540 Genome accession   NZ_CP110224
Coordinates   629707..630660 (+) Length   317 a.a.
NCBI ID   WP_209461745.1    Uniprot ID   -
Organism   Virgibacillus natechei strain DSM 25609     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 624707..635660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLD84_RS03520 (OLD84_03520) - 625464..626450 (-) 987 WP_209461741.1 diaminopimelate dehydrogenase -
  OLD84_RS03525 (OLD84_03525) - 626659..627198 (-) 540 WP_209461742.1 HD domain-containing protein -
  OLD84_RS03530 (OLD84_03530) fni 627370..628425 (+) 1056 WP_209461743.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  OLD84_RS03535 (OLD84_03535) - 628634..629356 (+) 723 WP_209461744.1 DsbA family protein -
  OLD84_RS03540 (OLD84_03540) ceuB 629707..630660 (+) 954 WP_209461745.1 ABC transporter permease Machinery gene
  OLD84_RS03545 (OLD84_03545) - 630650..631603 (+) 954 WP_209461746.1 iron chelate uptake ABC transporter family permease subunit -
  OLD84_RS03550 (OLD84_03550) - 631597..632352 (+) 756 WP_209461747.1 ABC transporter ATP-binding protein -
  OLD84_RS03555 (OLD84_03555) - 632785..633729 (+) 945 WP_209461748.1 siderophore ABC transporter substrate-binding protein -
  OLD84_RS03560 (OLD84_03560) - 634029..634730 (+) 702 WP_209461749.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35163.32 Da        Isoelectric Point: 9.6247

>NTDB_id=753155 OLD84_RS03540 WP_209461745.1 629707..630660(+) (ceuB) [Virgibacillus natechei strain DSM 25609]
MKLRYLFLALIVLSVTSVFLGVSDITPLDLFSLTEDQAQTLMVSRIPRLLSILIAGMSMSICGLIMQQLSRNKFVSPTTA
GTLDSARLGILVSMMIFTSASQFQQMIVAFMFALLGTFIFMRLLEKIRFKDAIFIPLVGLMFGNIISSISTFIAYQNDLI
QNMTSWMQGDFSMIMSGNYELMFVSIPILILAFFYANKFTIAGMGEDFSKNLGLNYRQIVNLGLIITALVTASVVLSVGV
IPFLGLIIPNIVTIYQGDHLKKSLLHTALLGAVFVLFCDVIGRVIIYPYEIPISLTVGVIGSGVFIYLLLRRKKYGF

Nucleotide


Download         Length: 954 bp        

>NTDB_id=753155 OLD84_RS03540 WP_209461745.1 629707..630660(+) (ceuB) [Virgibacillus natechei strain DSM 25609]
ATGAAATTAAGATACTTATTTTTAGCGCTGATCGTTCTTTCCGTTACATCCGTATTTCTTGGTGTTTCTGATATCACACC
ATTAGACCTGTTTAGCTTAACAGAAGACCAGGCACAAACCTTAATGGTTAGCAGAATTCCACGCCTTCTAAGTATCTTGA
TTGCAGGAATGAGCATGAGTATTTGTGGTTTAATCATGCAGCAGTTAAGCAGAAATAAATTCGTTTCTCCGACAACTGCA
GGTACATTGGATTCGGCAAGATTGGGGATTCTTGTTTCCATGATGATCTTTACATCTGCTAGCCAATTTCAGCAAATGAT
TGTAGCTTTTATGTTTGCACTTCTAGGTACATTCATATTCATGAGACTATTAGAAAAGATCAGATTTAAAGACGCCATAT
TCATCCCGCTAGTAGGATTAATGTTTGGTAATATTATTAGTTCCATATCAACTTTTATTGCCTATCAAAATGATCTTATT
CAAAACATGACTTCCTGGATGCAAGGCGATTTCTCTATGATCATGAGTGGAAATTATGAATTGATGTTTGTTAGTATCCC
AATTCTTATTCTGGCGTTCTTTTATGCAAATAAATTTACGATCGCAGGAATGGGAGAGGACTTTTCTAAAAACTTAGGTC
TTAATTATCGGCAGATTGTAAACCTTGGTCTGATTATTACGGCGCTAGTAACAGCCTCTGTTGTATTATCTGTTGGTGTG
ATTCCGTTCCTTGGTTTAATTATTCCGAACATTGTAACCATTTATCAAGGGGATCACTTGAAGAAAAGCTTATTACATAC
TGCATTACTAGGTGCTGTATTTGTACTATTTTGCGATGTTATCGGCAGAGTCATCATATATCCATATGAGATTCCAATCA
GTTTAACCGTTGGGGTTATAGGTAGTGGAGTATTTATCTACCTATTGTTAAGGAGAAAGAAATATGGGTTCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.114

99.685

0.539