Detailed information NTG0753148

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QGM68_RS10845
• Genome accession: NZ_CP123951
• Coordinates: 2261292..2262284 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TL012
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2256292..2267284

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QGM68_RS10815 (QGM68_10815)	ispD	2256353..2257063 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QGM68_RS10820 (QGM68_10820)	ispF	2257063..2257542 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QGM68_RS10825 (QGM68_10825)	truD	2257539..2258588 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QGM68_RS10830 (QGM68_10830)	surE	2258569..2259330 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QGM68_RS10835 (QGM68_10835)	pcm	2259324..2259950 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QGM68_RS10840 (QGM68_10840)	nlpD	2260135..2261229 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QGM68_RS10845 (QGM68_10845)	rpoS	2261292..2262284 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QGM68_RS10850 (QGM68_10850)	ygbN	2262378..2263742 (-)	1365	WP_021547117.1	GntP family transporter	-
QGM68_RS10855 (QGM68_10855)	ygbM	2263831..2264607 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
QGM68_RS10860 (QGM68_10860)	ygbL	2264612..2265250 (-)	639	WP_001278994.1	aldolase	-
QGM68_RS10865 (QGM68_10865)	otnK	2265247..2266496 (-)	1250	Protein_2105	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=753148 QGM68_RS10845 WP_000081550.1 2261292..2262284(+) (rpoS) [Escherichia coli strain TL012]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=753148 QGM68_RS10845 WP_000081550.1 2261292..2262284(+) (rpoS) [Escherichia coli strain TL012]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715