Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QHG49_RS17605 Genome accession   NZ_CP123923
Coordinates   4058697..4059818 (-) Length   373 a.a.
NCBI ID   WP_301490292.1    Uniprot ID   -
Organism   Streptomyces sp. WP-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4053697..4064818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG49_RS17595 (QHG49_17600) gyrB 4055693..4057741 (-) 2049 WP_145488824.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QHG49_RS17600 (QHG49_17605) - 4058164..4058700 (-) 537 WP_145488822.1 DUF721 domain-containing protein -
  QHG49_RS17605 (QHG49_17610) recF 4058697..4059818 (-) 1122 WP_301490292.1 DNA replication/repair protein RecF Machinery gene
  QHG49_RS17610 (QHG49_17615) gnd 4059900..4060778 (-) 879 WP_145488819.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  QHG49_RS17615 (QHG49_17620) dnaN 4060962..4062092 (-) 1131 WP_145488817.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40716.41 Da        Isoelectric Point: 8.3913

>NTDB_id=753073 QHG49_RS17605 WP_301490292.1 4058697..4059818(-) (recF) [Streptomyces sp. WP-1]
MHVTHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPLVRLGAERAVIRAQVRQGDRQ
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAALARRHGGRTMDLSTLDVWDQHLAHAGAELLARRLDLIAALRPLADKAYEQLAPGGGPLALEYKPSAPGEAH
TREDLYPQLLAALAEARKQEIERGVTLVGPHRDDLVLKLGQLPAKGYASHGESWSYALALRLASYELLRAEGNEPVLVLD
DVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPQVLAGARYSVSGGTVERV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=753073 QHG49_RS17605 WP_301490292.1 4058697..4059818(-) (recF) [Streptomyces sp. WP-1]
ATGCACGTCACGCATCTCTCGCTGGCCGACTTCCGTTCCTACGCGCGGGCCGAGGTCCCGCTCGACCCGGGCGTCACGGC
CTTCGTCGGGCCCAACGGCCAGGGCAAGACCAACCTGGTGGAGGCGGTCGGCTACCTGGCGACCCTGGGCAGCCACCGCG
TCGCCTCCGACGCGCCGCTGGTGCGCCTGGGCGCCGAGCGGGCCGTGATCAGGGCGCAGGTCCGCCAGGGCGACCGGCAG
CAGCTGATCGAGCTGGAGCTGAACCCCGGCCGCGCCAACCGCGCCCGGATCAACCGGTCCTCGCAGGTCAGACCCCGGGA
CGTGCTGGGCATCGTACGGACCGTGCTGTTCGCGCCCGAGGACCTCGCCCTGGTGAAGGGGGACCCCGGGGAGCGGCGCA
GGTTCCTGGACGAGCTGATCACCGCGCGCTCCCCGCGGATGGCCGGGGTGCGCTCCGACTACGAGCGGGTGCTCAAGCAG
CGCAACACGCTCCTGAAGTCCGCGGCGCTCGCGCGCCGGCACGGCGGGCGGACCATGGACCTGTCCACCCTCGACGTGTG
GGACCAGCACCTGGCGCACGCCGGGGCCGAGCTGCTCGCCCGGCGGCTCGATCTGATCGCCGCGCTGCGGCCGCTGGCCG
ACAAGGCGTACGAGCAGCTGGCCCCCGGCGGCGGCCCGCTCGCGCTGGAGTACAAGCCGTCCGCGCCCGGCGAGGCCCAC
ACCCGCGAGGACCTGTACCCGCAGCTGCTCGCCGCCCTGGCCGAGGCGCGCAAGCAGGAGATCGAGCGGGGCGTCACCCT
CGTCGGTCCCCATCGCGACGATCTGGTGCTGAAACTCGGCCAGTTGCCCGCCAAGGGGTACGCCTCGCACGGCGAGTCCT
GGTCGTACGCCCTCGCCCTGCGCCTCGCCTCGTACGAGCTGCTGCGCGCCGAGGGCAACGAGCCCGTCCTCGTCCTGGAC
GACGTCTTCGCCGAGCTGGACGCGCGCCGCCGCGAGCGGCTGGCCGAGCTGGTCGCGCCCGGCGAGCAGGTGCTGGTCAC
CGCCGCCGTGGACGACGACGTCCCGCAGGTGCTGGCCGGGGCGCGGTACTCCGTCTCGGGCGGGACGGTGGAACGCGTAT
GA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.418

94.906

0.365