Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QG728_RS00535 Genome accession   NZ_CP123854
Coordinates   110952..111587 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain WB4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 105952..116587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QG728_RS00510 (QG728_00510) - 106008..106988 (-) 981 WP_025467814.1 DNA polymerase III subunit delta' -
  QG728_RS00515 (QG728_00515) kdsB 107000..107761 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QG728_RS00520 (QG728_00520) lpxK 107771..108781 (-) 1011 WP_002047472.1 tetraacyldisaccharide 4'-kinase -
  QG728_RS00525 (QG728_00525) msbA 108784..110511 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  QG728_RS00530 (QG728_00530) - 110508..110936 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  QG728_RS00535 (QG728_00535) exbB 110952..111587 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QG728_RS00540 (QG728_00540) - 111637..112524 (-) 888 WP_002047203.1 ParB/RepB/Spo0J family partition protein -
  QG728_RS00545 (QG728_00545) - 112521..113303 (-) 783 WP_000057212.1 ParA family protein -
  QG728_RS00550 (QG728_00550) rsmG 113325..113957 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QG728_RS00555 (QG728_00555) murU 114045..114734 (-) 690 WP_002047184.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  QG728_RS00560 (QG728_00560) - 114734..115747 (-) 1014 WP_001096106.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=752966 QG728_RS00535 WP_000264037.1 110952..111587(-) (exbB) [Acinetobacter baumannii strain WB4]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=752966 QG728_RS00535 WP_000264037.1 110952..111587(-) (exbB) [Acinetobacter baumannii strain WB4]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393