Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OFY13_RS11080 Genome accession   NZ_CP110188
Coordinates   2462693..2463211 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain E1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2457693..2468211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY13_RS11055 (OFY13_11055) rimM 2457802..2458356 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  OFY13_RS11060 (OFY13_11060) rpsP 2458384..2458632 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  OFY13_RS11065 (OFY13_11065) ffh 2458868..2460253 (-) 1386 WP_000462715.1 signal recognition particle protein -
  OFY13_RS11070 (OFY13_11070) - 2460466..2461260 (+) 795 WP_000369279.1 inner membrane protein YpjD -
  OFY13_RS11075 (OFY13_11075) - 2461343..2462623 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  OFY13_RS11080 (OFY13_11080) luxS 2462693..2463211 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  OFY13_RS11085 (OFY13_11085) gshA 2463260..2464834 (-) 1575 WP_000032608.1 glutamate--cysteine ligase -
  OFY13_RS11090 (OFY13_11090) - 2464946..2467801 (-) 2856 WP_001233045.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=752952 OFY13_RS11080 WP_001130227.1 2462693..2463211(-) (luxS) [Vibrio cholerae strain E1]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=752952 OFY13_RS11080 WP_001130227.1 2462693..2463211(-) (luxS) [Vibrio cholerae strain E1]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGTTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1