Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OFY13_RS07940 Genome accession   NZ_CP110188
Coordinates   1763429..1764853 (+) Length   474 a.a.
NCBI ID   WP_001183690.1    Uniprot ID   -
Organism   Vibrio cholerae strain E1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1758429..1769853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY13_RS07920 (OFY13_07920) - 1758824..1759609 (-) 786 WP_000718972.1 adenosylcobinamide-GDP ribazoletransferase -
  OFY13_RS07925 (OFY13_07925) cobT 1759609..1760634 (-) 1026 WP_000887082.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  OFY13_RS07930 (OFY13_07930) msrB 1761119..1761565 (-) 447 WP_000935882.1 peptide-methionine (R)-S-oxide reductase MsrB -
  OFY13_RS07935 (OFY13_07935) - 1761912..1763285 (+) 1374 WP_000117950.1 L-cystine transporter -
  OFY13_RS07940 (OFY13_07940) sbcB 1763429..1764853 (+) 1425 WP_001183690.1 exodeoxyribonuclease I Machinery gene
  OFY13_RS07945 (OFY13_07945) - 1764885..1765259 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  OFY13_RS07950 (OFY13_07950) - 1765250..1765924 (+) 675 WP_000266245.1 LrgB family protein -
  OFY13_RS07955 (OFY13_07955) cdd 1766094..1766981 (+) 888 WP_001245902.1 cytidine deaminase -
  OFY13_RS07960 (OFY13_07960) - 1767140..1768015 (+) 876 WP_000462871.1 AEC family transporter -
  OFY13_RS07965 (OFY13_07965) purT 1768169..1769344 (+) 1176 WP_000468083.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54472.80 Da        Isoelectric Point: 5.9815

>NTDB_id=752944 OFY13_RS07940 WP_001183690.1 1763429..1764853(+) (sbcB) [Vibrio cholerae strain E1]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHISVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQDSDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMVNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=752944 OFY13_RS07940 WP_001183690.1 1763429..1764853(+) (sbcB) [Vibrio cholerae strain E1]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTTTTCGACTACGAGACTTGGGGGGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGCGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTACCTGCTCCTGAAGCCGCATTGATCACAGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCAAACACCACTAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACTCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATTGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATATTTCTGTTGCCAACGGCATTGAGCACAGCAACGCACACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AACTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGTCACTAC
ACCAGCTGGATTGTGCCTATTGCTTGGCATCCAACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCAGCCAAAACCTTGACCGCCGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGATAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCAGATAAG
CGCATTGAACCGCTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGGTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTAGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.523

100

0.985