Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OFY13_RS01410 Genome accession   NZ_CP110188
Coordinates   300732..301364 (-) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio cholerae strain E1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 295732..306364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY13_RS01390 (OFY13_01390) - 295882..297093 (+) 1212 WP_000215480.1 aspartate aminotransferase family protein -
  OFY13_RS01395 (OFY13_01395) astA 297233..298252 (+) 1020 WP_000962051.1 arginine N-succinyltransferase -
  OFY13_RS01400 (OFY13_01400) astD 298262..299719 (+) 1458 WP_000150135.1 succinylglutamate-semialdehyde dehydrogenase -
  OFY13_RS01405 (OFY13_01405) - 299862..300653 (+) 792 WP_000189091.1 DUF1338 domain-containing protein -
  OFY13_RS01410 (OFY13_01410) crp 300732..301364 (-) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  OFY13_RS01415 (OFY13_01415) - 301607..302476 (-) 870 WP_001274667.1 phosphoribulokinase -
  OFY13_RS01420 (OFY13_01420) - 302573..302782 (-) 210 WP_000586561.1 YheU family protein -
  OFY13_RS01425 (OFY13_01425) - 302911..303900 (-) 990 WP_000206392.1 hydrolase -
  OFY13_RS01430 (OFY13_01430) - 303897..304382 (-) 486 WP_001278734.1 TIGR02444 family protein -
  OFY13_RS01435 (OFY13_01435) - 304383..306299 (-) 1917 WP_000627675.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=752933 OFY13_RS01410 WP_000242749.1 300732..301364(-) (crp) [Vibrio cholerae strain E1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=752933 OFY13_RS01410 WP_000242749.1 300732..301364(-) (crp) [Vibrio cholerae strain E1]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGTGAGAAGGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTCGGCCTGTTTGAAGAAGGT
CAAGAGCGTACAGCTTGGGTTCGTGCCAAAACACCGTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAGTTAAT
CCAAGTTAACCCAGACATTTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAATCTTGCACGTCAGCCAGATGCGATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACTTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467