Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OK019_RS16770 Genome accession   NZ_CP110167
Coordinates   3344963..3345559 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain YZ22CS094     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3339963..3350559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK019_RS16755 helD 3340171..3342225 (-) 2055 WP_009485779.1 DNA helicase IV -
  OK019_RS16760 - 3342350..3342796 (+) 447 WP_002898425.1 YccF domain-containing protein -
  OK019_RS16765 yccS 3342814..3344949 (+) 2136 WP_002898422.1 YccS family putative transporter -
  OK019_RS16770 sxy/tfoX 3344963..3345559 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  OK019_RS16775 sulA 3345908..3346417 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  OK019_RS16780 ompA 3346770..3347840 (+) 1071 WP_002898408.1 porin OmpA -
  OK019_RS16785 matP 3347972..3348424 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  OK019_RS16790 - 3348610..3350367 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=752840 OK019_RS16770 WP_004179217.1 3344963..3345559(-) (sxy/tfoX) [Klebsiella pneumoniae strain YZ22CS094]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=752840 OK019_RS16770 WP_004179217.1 3344963..3345559(-) (sxy/tfoX) [Klebsiella pneumoniae strain YZ22CS094]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51