Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OMD38_RS17960 Genome accession   NZ_CP110160
Coordinates   3542363..3542959 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain YZ22CS089     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3537363..3547959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMD38_RS17945 helD 3537571..3539625 (-) 2055 WP_020324408.1 DNA helicase IV -
  OMD38_RS17950 - 3539750..3540196 (+) 447 WP_002898425.1 YccF domain-containing protein -
  OMD38_RS17955 yccS 3540214..3542349 (+) 2136 WP_004147856.1 YccS family putative transporter -
  OMD38_RS17960 sxy/tfoX 3542363..3542959 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  OMD38_RS17965 sulA 3543308..3543817 (+) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  OMD38_RS17970 ompA 3544170..3545240 (+) 1071 WP_002898408.1 porin OmpA -
  OMD38_RS17975 matP 3545372..3545824 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  OMD38_RS17980 - 3546010..3547767 (+) 1758 WP_020324406.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=752817 OMD38_RS17960 WP_004179217.1 3542363..3542959(-) (sxy/tfoX) [Klebsiella pneumoniae strain YZ22CS089]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=752817 OMD38_RS17960 WP_004179217.1 3542363..3542959(-) (sxy/tfoX) [Klebsiella pneumoniae strain YZ22CS089]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51