Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   G6L82_RS05650 Genome accession   NZ_CP123847
Coordinates   1146242..1149163 (+) Length   973 a.a.
NCBI ID   WP_003515263.1    Uniprot ID   A0A1B9UEG4
Organism   Agrobacterium tumefaciens strain H25/79     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1141242..1154163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L82_RS05635 (G6L82_005635) - 1143434..1144063 (+) 630 WP_065702509.1 MarC family protein -
  G6L82_RS05640 (G6L82_005640) - 1144187..1145335 (+) 1149 WP_065702508.1 HPP family protein -
  G6L82_RS05645 (G6L82_005645) ssb 1145401..1145976 (-) 576 WP_003515262.1 single-stranded DNA-binding protein Machinery gene
  G6L82_RS05650 (G6L82_005650) uvrA 1146242..1149163 (+) 2922 WP_003515263.1 excinuclease ABC subunit UvrA Machinery gene
  G6L82_RS05655 (G6L82_005655) - 1149219..1150019 (+) 801 WP_065702507.1 DUF72 domain-containing protein -
  G6L82_RS05660 (G6L82_005660) dusA 1150025..1150984 (-) 960 WP_065702506.1 tRNA dihydrouridine(20/20a) synthase DusA -
  G6L82_RS05665 (G6L82_005665) - 1151602..1152858 (+) 1257 WP_236761502.1 TylF/MycF/NovP-related O-methyltransferase -
  G6L82_RS05670 (G6L82_005670) - 1153229..1153723 (+) 495 WP_003515270.1 ferritin-like domain-containing protein -

Sequence

Protein


Download         Length: 973 a.a.        Molecular weight: 107177.22 Da        Isoelectric Point: 6.7160

>NTDB_id=752767 G6L82_RS05650 WP_003515263.1 1146242..1149163(+) (uvrA) [Agrobacterium tumefaciens strain H25/79]
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDRIE
GLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGVPYSPATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRG
RKGEYKKELAELMKKGFQRVKVDGQFYEIADVPVLDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAVAEFA
DKPLPPEETSAGGSANKSLNETHERMLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPTCDGLGSQQKVDENLIVPEPA
RTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWTDLSKEAQHAILQGTDDKIEFNYQDGARSYKTVKNFEGIVPN
LERRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKINRMHIGEVTQMSIRMARDWFETLPENLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKHLRDIG
NTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGTPQEVMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGA
RGNNLKNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVT
FKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQALFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEP
TTGLHFHDVNKLLEMLQALVDQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKNERSYTGHFLKEL
LERRPAGKREAAE

Nucleotide


Download         Length: 2922 bp        

>NTDB_id=752767 G6L82_RS05650 WP_003515263.1 1146242..1149163(+) (uvrA) [Agrobacterium tumefaciens strain H25/79]
ATGAGTGAACTGAAGACGATTTCCATCCGTGGTGCCCGTGAGCATAACCTCAAGGGTATCGATCTGGATCTACCGCGCAA
TAAGCTGATCGTCATGACCGGGCTCTCCGGCTCGGGCAAGTCGTCGCTCGCCTTCGACACAATCTATGCCGAGGGCCAGC
GCCGTTATGTCGAGAGCCTCTCGGCCTATGCGCGCCAGTTCCTCGAAATGATGCAGAAGCCGGATGTAGACCGCATCGAG
GGGCTTTCTCCGGCGATTTCCATCGAGCAGAAAACCACCTCGAAGAACCCGCGCTCCACGGTCGGCACGGTCACGGAAAT
CTACGACTATATGCGCCTGCTGTTTGCGCGTGTCGGTGTGCCCTACTCGCCGGCGACGGGCCTGCCGATCGAGAGCCAGA
CGGTCAGCCAGATGGTCGACCGTATCCTTGCCTTCGAGGAAGGCACGCGCCTTTATATTCTCGCGCCGATCGTGCGCGGC
CGCAAAGGCGAATATAAAAAGGAACTCGCCGAGCTGATGAAGAAGGGCTTCCAGCGCGTCAAGGTGGATGGCCAGTTCTA
CGAGATCGCTGACGTTCCCGTCCTCGACAAGAAGTACAAACACGATATCGATGTGGTGGTGGACCGCGCCGTCGTGCGCC
CGGATATGGCAGCACGCCTTGCCGACAGTCTCGAGACCTGCCTCAAGCTCGCCGACGGGTTGGCAGTGGCCGAATTTGCC
GACAAGCCCCTGCCGCCGGAAGAAACCTCGGCTGGCGGCTCCGCAAACAAATCGCTCAATGAGACCCACGAGCGTATGCT
GTTTTCGGAAAAATTCGCCTGCCCGGTCTCCGGCTTCACCATCCCGGAAATCGAGCCCCGGCTTTTCTCCTTCAACAATC
CCTTCGGCGCCTGCCCCACCTGTGACGGTCTCGGCTCGCAGCAGAAGGTGGACGAAAACCTGATCGTGCCCGAACCTGCA
CGCACCCTGCGGGATGGCGCGATCGCCCCCTGGGCCAAGTCGTCTTCCCCCTATTACAACCAGACGCTGGAGGCGCTGGG
CAAGGCCTTCGGTTTCAAGCTGTCGAGCAAATGGACGGACCTTTCGAAAGAGGCGCAGCACGCCATTCTTCAGGGCACTG
ACGACAAGATCGAGTTCAACTATCAGGACGGCGCGCGCTCCTACAAGACGGTGAAGAATTTCGAAGGCATCGTTCCCAAT
CTGGAGCGTCGCTGGAAAGAAACCGACAGCGCCTGGGCGCGCGAGGAAATCGAGCGTTATATGTCGGCGGCCCCCTGCCC
GGCCTGCGCCGGCTATCGCCTGAAGCCGGAAGCGCTCGCCGTCAAGATCAACAGAATGCACATCGGCGAAGTCACCCAGA
TGTCGATCCGTATGGCACGCGACTGGTTCGAGACGCTGCCGGAAAATCTGAACGCCAAACAGAACGAGATCGCGGTTCGC
ATCCTCAAGGAAATCCGCGAACGTCTGCGATTCCTCAACGATGTCGGGCTGGATTATCTCAGCCTGTCACGCAACTCCGG
CACGCTTTCCGGCGGAGAAAGCCAGCGCATCCGGCTTGCGTCGCAGATCGGCTCCGGCCTCACCGGCGTTCTCTATGTTC
TGGATGAGCCGTCCATCGGCCTTCATCAGCGTGACAATGCCCGCCTGCTCGATACGCTGAAGCACCTGCGCGACATCGGC
AATACGGTGATCGTGGTCGAACACGACGAGGATGCCATTCTGACGGCGGATTACGTTGTCGATATCGGCCCCGCCGCCGG
CATTCACGGTGGTCAGGTCATCGCCGAAGGCACGCCGCAGGAGGTGATGGCCAATCCGAAATCGCTGACCGGCAAATATC
TATCCGGCGAACTCGGCGTCGCCGTGCCGGCAGAACGCCGCAAGCCGAAGAAGGGCCGCGAAATCAAGGTTTTTGGCGCA
CGCGGCAACAACCTGAAGAATGTGACTGCGGCCGTTCCCCTTGGTGTTTTCACCGCCGTTACCGGCGTGTCGGGTGGTGG
CAAATCCACATTCCTGATCGAGACGCTCTATAAGTCGGCAGCACGCCGCGTGATGGGCGCGCGCGAAATTCCGGCCGAGC
ATGATCGCATCGATGGTTTCGAATTCATCGACAAGGTGATCGATATCGACCAGTCGCCAATCGGCCGCACGCCACGATCA
AACCCCGCCACCTACACCGGCGCATTCACGCCGATCCGTGACTGGTTCGCCGGTCTGCCGGAGGCGAAGGCGCGCGGTTA
TGCACCTGGCCGTTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAAGCCTGCCAGGGCGACGGCGTCATCAAGATCGAGA
TGCACTTCCTGCCTGATGTCTATGTCACCTGCGACGTCTGCCACGGCAAGCGTTACAATCGCGAGACGCTGGATGTGACC
TTCAAGGGCAAGTCCATTGCCGACGTGCTTGATATGACGGTGGAAGAAGGCGTTGAATTCTTCGCCGCCGTTCCGGCCGT
GCGTGACAAGCTGCAAGCGCTGTTCGATGTCGGCCTTGGTTACATCAAGGTCGGCCAGCAGGCCAATACGCTCTCCGGCG
GCGAGGCGCAGCGCGTCAAGCTCGCCAAGGAACTGTCAAAACGCTCCACCGGCCGCACGCTCTACATCCTCGATGAACCG
ACGACGGGTCTCCATTTCCACGACGTCAACAAGCTTCTGGAAATGCTGCAGGCGCTGGTGGATCAGGGCAATTCCGTCGT
GGTAATCGAGCACAATCTCGAAGTCATCAAGACGGCCGACTGGATCATCGATATTGGCCCCGAAGGCGGCACGGGCGGCG
GCGAAGTGGTGGCAACCGGAACGCCGGAAGACATCGTCAAGAACGAGCGCTCCTATACCGGCCATTTCCTGAAGGAACTT
CTGGAACGCCGGCCAGCCGGAAAACGCGAGGCTGCGGAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(133-239)

UvrA DNA-binding domain (UvrA_DNA-bind)

(311-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9UEG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.576

98.356

0.566
  uvrA Streptococcus pneumoniae TIGR4

57.576

98.356

0.566
  uvrA Streptococcus pneumoniae D39

57.576

98.356

0.566