Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OMA13_RS16610 Genome accession   NZ_CP110148
Coordinates   3349370..3349966 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain YZ22CS023     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3344370..3354966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMA13_RS16595 helD 3344578..3346632 (-) 2055 WP_004179218.1 DNA helicase IV -
  OMA13_RS16600 - 3346757..3347203 (+) 447 WP_002898425.1 YccF domain-containing protein -
  OMA13_RS16605 yccS 3347221..3349356 (+) 2136 WP_032434245.1 YccS family putative transporter -
  OMA13_RS16610 sxy/tfoX 3349370..3349966 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  OMA13_RS16615 sulA 3350315..3350824 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  OMA13_RS16620 ompA 3351177..3352247 (+) 1071 WP_002898408.1 porin OmpA -
  OMA13_RS16625 matP 3352379..3352831 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  OMA13_RS16630 - 3353017..3354774 (+) 1758 WP_032434243.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=752747 OMA13_RS16610 WP_004179217.1 3349370..3349966(-) (sxy/tfoX) [Klebsiella pneumoniae strain YZ22CS023]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=752747 OMA13_RS16610 WP_004179217.1 3349370..3349966(-) (sxy/tfoX) [Klebsiella pneumoniae strain YZ22CS023]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51