Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   A6U93_RS13295 Genome accession   NZ_CP123838
Coordinates   2690849..2692657 (+) Length   602 a.a.
NCBI ID   WP_065659732.1    Uniprot ID   A0AA44FAA2
Organism   Agrobacterium tumefaciens strain 15-1187-1-2a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2685849..2697657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6U93_RS13295 (A6U93_13295) recQ 2690849..2692657 (+) 1809 WP_065659732.1 DNA helicase RecQ Machinery gene
  A6U93_RS13300 (A6U93_13300) - 2692712..2693944 (-) 1233 WP_065659733.1 ROK family transcriptional regulator -
  A6U93_RS13305 (A6U93_13305) - 2694211..2695233 (+) 1023 WP_003514241.1 sugar ABC transporter substrate-binding protein -
  A6U93_RS13310 (A6U93_13310) - 2695457..2696539 (+) 1083 WP_038489298.1 ABC transporter permease -
  A6U93_RS13315 (A6U93_13315) - 2696539..2697321 (+) 783 WP_003514244.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67036.84 Da        Isoelectric Point: 6.4507

>NTDB_id=752746 A6U93_RS13295 WP_065659732.1 2690849..2692657(+) (recQ) [Agrobacterium tumefaciens strain 15-1187-1-2a]
MITDPLQILKTVYGYDTFRGQQAEIIRHVMAGNNAFVLMPTGGGKSLCYQIPALARKGMGLVVSPLIALMVDQVAALRQA
GVRAEALNSDLSPEERRLLWQDMRAGKVDILYAAPETLLKPDVLDALQPISLSLIAIDEAHCLSQWGHDFRPPYRQLDTL
IERFPDTPRMALTATADEPTRAEILGHLGINGSDAFIAGFDRPNIRYAIMEKDNPRTQLKRFLTGREDESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKAAREANQTHFQHGEAVIMVATVAFGMGIDKPDVRFVVHIDLPSSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAGDQRKNMERRKLDALLGLAETAGCRRRVLLSYFGDYCEPCGNCDTCAEPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGMEDERISSFGHDRITTYGIGKEHDNRTWRAILRQMVALRLIEVDLAG
HGGLSISEEGRRFLREKPSLMLRIPTAPRSARQQTNRKPTAIVLPDADRSLFEALRAKRMEIARAQNVPPYVIFHDKTLI
ELAAARPASVGEMAQIPGVGDTKLERYGPAFLAAIMEHAASE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=752746 A6U93_RS13295 WP_065659732.1 2690849..2692657(+) (recQ) [Agrobacterium tumefaciens strain 15-1187-1-2a]
GTGATCACCGACCCCTTGCAGATTCTCAAGACCGTCTATGGCTACGATACGTTTCGTGGACAGCAGGCCGAAATCATCCG
GCATGTGATGGCAGGCAACAATGCTTTTGTGTTGATGCCAACAGGGGGCGGGAAGTCGCTTTGTTACCAGATTCCGGCGC
TCGCCCGTAAGGGAATGGGGCTGGTTGTTTCGCCCCTGATCGCGCTGATGGTTGATCAGGTCGCCGCCTTGCGTCAGGCA
GGTGTGCGGGCAGAAGCTCTCAACTCCGATCTTTCCCCAGAAGAGCGGCGGCTACTCTGGCAGGATATGCGGGCTGGCAA
GGTCGATATTCTCTATGCCGCGCCTGAGACCCTTCTCAAGCCGGACGTTCTGGATGCGCTTCAACCTATCAGCCTGTCGC
TGATCGCGATCGACGAAGCTCATTGTCTATCGCAGTGGGGGCACGATTTCCGTCCCCCGTACCGCCAGCTAGACACGTTG
ATCGAGCGCTTTCCGGATACGCCACGCATGGCGCTCACGGCGACTGCGGACGAGCCAACCCGCGCCGAAATTCTGGGTCA
TCTCGGGATCAACGGAAGCGACGCCTTCATAGCCGGATTCGACCGGCCAAATATCCGCTATGCGATCATGGAAAAGGATA
ATCCACGTACGCAGCTGAAGCGCTTCCTGACGGGTCGCGAGGACGAAAGCGGCATCGTCTATTGCCTTTCCAAACGCAAG
GTAGATGAGACGGCAGCCTGGCTGCGTGAGGAGGGGCGCGATGCGCTGCCCTATCACGCCGGCATGGACAAGGCCGCCCG
CGAGGCGAACCAGACCCACTTCCAGCATGGTGAAGCTGTCATCATGGTTGCAACCGTGGCTTTCGGTATGGGCATCGACA
AACCGGATGTGCGCTTCGTCGTGCATATCGATCTGCCCAGCAGCATCGAAGCCTATTATCAGGAAACCGGCCGTGCCGGC
CGTGATGGTCTGCCGTCCGACGTGCTTATGCTTTACGGTTATGAAGACATCGCATTGCGCAACCGCTTTATCGAAGAGTC
GGATGCGGGCGACCAGCGCAAAAACATGGAGCGCCGGAAGCTCGATGCGTTGCTTGGTCTCGCGGAAACAGCCGGTTGCC
GTCGGCGGGTGCTTTTGTCTTATTTCGGCGACTATTGCGAGCCCTGCGGCAATTGCGACACCTGTGCGGAACCGCCGGAC
CTGTTTGATGGTGCCATTGCCGCGCAGAAGTTGCTGTCCTGCATTTACCGCACGGGAGAACGTTTCGGCCAGGCCTATGT
CATCCGCGTATTGCTGGGCATGGAAGATGAACGGATATCGAGCTTTGGTCACGATCGGATCACGACCTACGGCATCGGCA
AAGAGCACGACAATCGCACCTGGCGGGCCATCCTGCGCCAGATGGTTGCGCTGCGCCTGATCGAGGTTGATCTGGCCGGT
CACGGGGGATTGTCCATTTCCGAAGAAGGGAGGCGGTTCCTGCGCGAAAAGCCGTCCCTGATGTTGAGGATACCGACCGC
TCCCCGTTCGGCGCGACAACAGACGAATCGCAAGCCCACCGCCATTGTTCTACCGGATGCCGATCGCAGTCTCTTTGAGG
CGCTGCGTGCGAAGCGCATGGAAATTGCCCGCGCACAGAACGTTCCGCCCTATGTGATTTTTCACGACAAGACACTCATT
GAGCTTGCGGCAGCAAGACCGGCCTCTGTGGGGGAAATGGCGCAGATACCCGGAGTGGGAGACACAAAGCTGGAACGATA
CGGCCCTGCTTTTCTGGCGGCGATCATGGAACATGCCGCCAGCGAGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(220-322)

DEAD/DEAH box helicase (DEAD)

(22-177)

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

RQC domain (RQC)

(398-510)

HRDC domain (HRDC)

(530-595)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA44FAA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.811

100

0.379