Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OCX19_RS06305 Genome accession   NZ_AP024734
Coordinates   1283875..1284648 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 59691     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1278875..1289648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX19_RS06285 trmFO 1279219..1280526 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  OCX19_RS06290 xerC 1280943..1281839 (+) 897 WP_001015602.1 tyrosine recombinase XerC -
  OCX19_RS06295 hslV 1281836..1282381 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  OCX19_RS06300 hslU 1282447..1283850 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  OCX19_RS06305 codY 1283875..1284648 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OCX19_RS06310 - 1284699..1284791 (+) 93 WP_031788481.1 hypothetical protein -
  OCX19_RS06315 rpsB 1284990..1285757 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  OCX19_RS06320 - 1285791..1285904 (+) 114 WP_001789890.1 hypothetical protein -
  OCX19_RS06325 tsf 1285939..1286820 (+) 882 WP_000201387.1 translation elongation factor Ts -
  OCX19_RS06330 pyrH 1286957..1287679 (+) 723 WP_000057330.1 UMP kinase -
  OCX19_RS06335 frr 1287698..1288252 (+) 555 WP_001280006.1 ribosome recycling factor -
  OCX19_RS06340 - 1288625..1289395 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=75274 OCX19_RS06305 WP_000055337.1 1283875..1284648(+) (codY) [Staphylococcus aureus strain 59691]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=75274 OCX19_RS06305 WP_000055337.1 1283875..1284648(+) (codY) [Staphylococcus aureus strain 59691]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATCCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment