Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   GZH91_RS15155 Genome accession   NZ_AP021884
Coordinates   2935308..2936747 (+) Length   479 a.a.
NCBI ID   WP_147073022.1    Uniprot ID   A0A512L896
Organism   Sulfuriferula plumbiphila strain Gro7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2930308..2941747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH91_RS15130 (SFPGR_30040) - 2931811..2932806 (+) 996 WP_147073031.1 KpsF/GutQ family sugar-phosphate isomerase -
  GZH91_RS15135 (SFPGR_30050) - 2932823..2933347 (+) 525 WP_147073029.1 HAD family hydrolase -
  GZH91_RS15140 (SFPGR_30060) lptC 2933344..2933916 (+) 573 WP_147073027.1 LPS export ABC transporter periplasmic protein LptC -
  GZH91_RS15145 (SFPGR_30070) lptA 2933900..2934505 (+) 606 WP_147073026.1 lipopolysaccharide transport periplasmic protein LptA -
  GZH91_RS15150 (SFPGR_30080) lptB 2934502..2935224 (+) 723 WP_147073024.1 LPS export ABC transporter ATP-binding protein -
  GZH91_RS15155 (SFPGR_30090) rpoN/rpoN1 2935308..2936747 (+) 1440 WP_147073022.1 RNA polymerase factor sigma-54 Machinery gene
  GZH91_RS15160 (SFPGR_30100) hpf 2936766..2937101 (+) 336 WP_147073020.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  GZH91_RS15165 (SFPGR_30110) ptsN 2937112..2937567 (+) 456 WP_147073018.1 PTS IIA-like nitrogen regulatory protein PtsN -
  GZH91_RS15170 (SFPGR_30120) hprK 2937567..2938511 (+) 945 WP_147073016.1 HPr(Ser) kinase/phosphatase -
  GZH91_RS15175 (SFPGR_30130) rapZ 2938511..2939344 (+) 834 WP_147073014.1 RNase adapter RapZ -
  GZH91_RS15180 (SFPGR_30140) - 2939341..2939715 (+) 375 WP_198415331.1 NusG domain II-containing protein -
  GZH91_RS15185 (SFPGR_30150) - 2939696..2940238 (+) 543 WP_147073012.1 Gx transporter family protein -
  GZH91_RS15190 (SFPGR_30160) - 2940235..2940861 (+) 627 WP_147073010.1 flavin prenyltransferase UbiX -
  GZH91_RS15195 (SFPGR_30170) - 2940909..2941499 (+) 591 WP_198415332.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53898.02 Da        Isoelectric Point: 4.9692

>NTDB_id=75274 GZH91_RS15155 WP_147073022.1 2935308..2936747(+) (rpoN/rpoN1) [Sulfuriferula plumbiphila strain Gro7]
MKHSLQLKLSQHLTLTPQLQQSIRLLQLSTLELNQELEQILQDNPLLERVDNLDDGETHINGSDPELRSEAPTETSSVAD
SSPEPEARELADIDWESEGSYGSPDDDDEDREYQQPSTETTSLRDHLVWQLNLTPLSERDKRLVLLLIDALDEGGYLSQS
LQDIVEMLPPELEIELDDLQIALKHLQNLEPTGVGARNLSECLTLQLLALPADTPHRDCALTIAGTHLSELATRDYIGLK
RKLHCDDDELRNARDLITHLNPKPGAGFGESDTRYIVPDVIVKKVKGLWVASLNPDAMPKLRINRMYADILSRNRDSGHQ
HLASQMQEAKWLIKNVMQRFETILKVSQSIIDRQRHFFEHGEVAMRPLVLREIAETVELHESTISRVTTQKFMMTPRGIY
ELKYFFGSHVSTETGGACSATAIRALIKQLVAAENSKKPLSDGQIADLLGQQGIVVARRTIAKYRESLQISPASQRKSL

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=75274 GZH91_RS15155 WP_147073022.1 2935308..2936747(+) (rpoN/rpoN1) [Sulfuriferula plumbiphila strain Gro7]
ATGAAACACAGTTTACAACTCAAGCTCTCACAGCATCTCACGTTGACGCCGCAACTGCAGCAGTCCATCCGGCTGTTGCA
GTTGTCCACGCTTGAGTTGAACCAGGAACTGGAGCAGATACTCCAGGACAACCCGTTGCTGGAACGCGTGGACAATCTGG
ATGACGGCGAGACTCACATCAATGGCAGCGACCCCGAGCTGCGCAGCGAAGCGCCCACCGAAACCAGCAGCGTGGCCGAT
AGCTCCCCGGAGCCAGAGGCACGCGAACTGGCCGACATCGACTGGGAAAGCGAAGGCAGCTACGGCTCGCCCGACGATGA
CGACGAAGACCGCGAGTATCAGCAACCCTCCACCGAGACCACTTCGCTGCGCGATCATCTGGTCTGGCAGCTTAATCTCA
CCCCGCTGTCGGAGCGCGACAAGCGTCTGGTTCTGCTGTTGATCGATGCGCTGGACGAAGGCGGCTACCTGTCGCAAAGC
CTGCAGGACATCGTGGAAATGTTGCCGCCGGAGCTGGAAATCGAGCTCGACGACTTGCAGATCGCGCTCAAACATTTGCA
AAATCTGGAACCCACCGGCGTCGGCGCGCGCAATCTGTCCGAATGCCTCACCCTCCAGCTGCTGGCGCTGCCAGCGGATA
CCCCCCATCGCGATTGTGCACTGACCATAGCGGGCACCCATTTGAGTGAGTTGGCGACGCGCGATTACATTGGGCTCAAA
CGCAAACTGCACTGCGATGATGACGAACTGCGCAATGCACGTGACCTGATTACCCACCTCAACCCCAAGCCGGGTGCCGG
TTTTGGCGAATCCGATACGCGCTACATCGTGCCGGATGTCATCGTGAAAAAAGTCAAGGGCCTGTGGGTGGCAAGCCTCA
ACCCTGACGCCATGCCCAAGCTGCGCATCAACCGCATGTACGCCGACATCCTGTCGCGCAACCGCGACAGCGGCCACCAG
CACCTGGCCAGCCAGATGCAGGAAGCCAAATGGCTGATCAAGAACGTCATGCAGCGTTTTGAAACCATTCTCAAGGTGTC
GCAAAGCATTATTGACCGCCAGCGCCATTTCTTCGAGCACGGCGAGGTGGCCATGCGCCCGCTGGTGCTGCGCGAGATTG
CCGAGACCGTGGAACTGCACGAATCCACCATTTCGCGCGTCACCACGCAAAAATTCATGATGACGCCGCGCGGCATTTAT
GAACTTAAATACTTTTTCGGCAGTCACGTCAGTACGGAGACGGGTGGCGCCTGTTCGGCAACTGCCATCCGCGCACTCAT
CAAACAACTGGTAGCCGCAGAAAACAGCAAGAAACCCCTATCTGACGGGCAGATTGCAGACCTGCTTGGCCAGCAAGGCA
TCGTGGTGGCACGCCGCACCATCGCCAAATACCGGGAATCCCTGCAAATATCGCCCGCCAGTCAGCGCAAGTCGCTCTAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(321-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(114-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A512L896

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

55.268

100

0.58

Multiple sequence alignment