Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   A6U93_RS11095 Genome accession   NZ_CP123838
Coordinates   2189212..2190177 (+) Length   321 a.a.
NCBI ID   WP_065658655.1    Uniprot ID   A0AA44J8B2
Organism   Agrobacterium tumefaciens strain 15-1187-1-2a     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2184212..2195177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6U93_RS11070 (A6U93_11070) - 2184504..2185448 (+) 945 WP_003514032.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  A6U93_RS11075 (A6U93_11075) - 2185445..2185939 (+) 495 WP_013636754.1 tripartite tricarboxylate transporter TctB family protein -
  A6U93_RS11080 (A6U93_11080) - 2186047..2187564 (+) 1518 WP_065658657.1 tripartite tricarboxylate transporter permease -
  A6U93_RS11085 (A6U93_11085) - 2187693..2187953 (+) 261 WP_003514037.1 hypothetical protein -
  A6U93_RS11090 (A6U93_11090) - 2188154..2189092 (+) 939 WP_065658656.1 siderophore ABC transporter substrate-binding protein -
  A6U93_RS11095 (A6U93_11095) ceuB 2189212..2190177 (+) 966 WP_065658655.1 ABC transporter permease Machinery gene
  A6U93_RS11100 (A6U93_11100) - 2190170..2191138 (+) 969 WP_065658654.1 iron chelate uptake ABC transporter family permease subunit -
  A6U93_RS11105 (A6U93_11105) - 2191135..2191893 (+) 759 WP_065658653.1 ABC transporter ATP-binding protein -
  A6U93_RS11110 (A6U93_11110) dps 2192019..2192507 (+) 489 WP_003514046.1 DNA starvation/stationary phase protection protein Dps -
  A6U93_RS11115 (A6U93_11115) - 2192585..2192806 (-) 222 WP_013636760.1 hypothetical protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 34176.17 Da        Isoelectric Point: 11.0429

>NTDB_id=752738 A6U93_RS11095 WP_065658655.1 2189212..2190177(+) (ceuB) [Agrobacterium tumefaciens strain 15-1187-1-2a]
MKSLSLILALLLALTLAIVSLFVGVSNVSLATLFAPDTSADALRVLLVSRIPRTLALILAGSSMAIAGLIMQMLVRNRFV
EPSTAGTTESAGLGLLTVTLLAPETPIFGKMLVAAAFALAGTALFLRILRQVPLRDVLLVPLIGIMLGGVISAVTTFFAY
RFDLLQSLGAWMTGDFSGVLRGRYELLWIGFVFAIAAYLAADRFTVAGMGRDFTTNLGLNYRRVMALGLTIVSLVSAVVV
VTVGMIPFLGLIVPNVVSLMIGDNMRRSVPWVATLGAVFVLACDIIGRTVRAPYEIPIGTVVGVIGSALFLYLLLRKRHH
G

Nucleotide


Download         Length: 966 bp        

>NTDB_id=752738 A6U93_RS11095 WP_065658655.1 2189212..2190177(+) (ceuB) [Agrobacterium tumefaciens strain 15-1187-1-2a]
GTGAAATCCCTGTCCCTCATCCTCGCCCTCCTTCTGGCGCTGACACTCGCCATCGTCAGCCTGTTCGTCGGCGTGAGCAA
CGTCTCGCTGGCGACGCTTTTTGCACCGGATACGAGCGCGGATGCACTGCGCGTGCTCCTCGTCAGCCGCATTCCGCGCA
CGCTGGCGCTCATACTGGCCGGAAGCTCGATGGCGATTGCCGGTCTCATCATGCAGATGCTGGTGCGCAACCGCTTCGTG
GAGCCTTCGACGGCTGGCACCACCGAATCCGCCGGCCTTGGCCTGCTCACCGTCACCCTGCTTGCCCCGGAAACGCCGAT
CTTCGGCAAGATGTTGGTGGCCGCCGCTTTCGCGCTGGCGGGAACCGCACTTTTCCTGCGTATTCTACGGCAGGTGCCGC
TACGCGATGTGCTGCTGGTGCCGCTGATCGGCATCATGCTGGGCGGCGTCATTTCTGCCGTCACCACTTTCTTCGCCTAT
CGTTTCGATCTGCTGCAATCGCTCGGCGCTTGGATGACCGGGGATTTTTCCGGCGTGCTGCGTGGCCGCTATGAATTGCT
GTGGATCGGCTTCGTTTTCGCCATCGCCGCCTATCTCGCCGCCGACCGTTTCACGGTGGCAGGCATGGGGCGCGACTTCA
CCACCAATCTCGGACTGAACTATCGCCGGGTGATGGCGCTCGGCCTCACCATCGTCTCGCTGGTCAGTGCCGTCGTCGTC
GTCACGGTCGGCATGATCCCTTTTCTCGGCCTGATTGTGCCGAATGTGGTCAGCCTGATGATCGGCGACAACATGCGCCG
TTCCGTGCCTTGGGTGGCGACGCTTGGCGCGGTCTTCGTTCTTGCCTGCGACATCATCGGCAGAACGGTGCGCGCGCCCT
ATGAGATACCGATCGGAACCGTGGTCGGCGTCATCGGCAGCGCGCTGTTCCTCTATCTCCTGCTCCGGAAACGCCACCAT
GGATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA44J8B2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

43.396

99.065

0.43