Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GZH91_RS10120 Genome accession   NZ_AP021884
Coordinates   1944238..1945599 (-) Length   453 a.a.
NCBI ID   WP_147072829.1    Uniprot ID   A0A512L810
Organism   Sulfuriferula plumbiphila strain Gro7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1939238..1950599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH91_RS10100 (SFPGR_19990) hpnD 1940050..1940883 (+) 834 WP_147072823.1 presqualene diphosphate synthase HpnD -
  GZH91_RS10105 (SFPGR_20000) hpnE 1940886..1942157 (+) 1272 WP_147072869.1 hydroxysqualene dehydroxylase HpnE -
  GZH91_RS10110 (SFPGR_20010) - 1942154..1942903 (+) 750 WP_147072825.1 YciK family oxidoreductase -
  GZH91_RS10115 (SFPGR_20020) - 1942896..1944227 (+) 1332 WP_147072827.1 serine/threonine-protein kinase -
  GZH91_RS10120 (SFPGR_20030) radA 1944238..1945599 (-) 1362 WP_147072829.1 DNA repair protein RadA Machinery gene
  GZH91_RS10125 (SFPGR_20040) cysM 1945620..1946513 (-) 894 WP_147072831.1 cysteine synthase CysM -
  GZH91_RS10130 (SFPGR_20050) rfaD 1946572..1947573 (-) 1002 WP_147072833.1 ADP-glyceromanno-heptose 6-epimerase -
  GZH91_RS10135 (SFPGR_20060) rfaE1 1947680..1948609 (-) 930 WP_147072835.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  GZH91_RS10140 (SFPGR_20070) - 1948606..1949928 (-) 1323 WP_147072837.1 UDP-glucose/GDP-mannose dehydrogenase family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48116.46 Da        Isoelectric Point: 7.1638

>NTDB_id=75273 GZH91_RS10120 WP_147072829.1 1944238..1945599(-) (radA) [Sulfuriferula plumbiphila strain Gro7]
MAKAKTLYSCTECGDTLSKWQGQCPSCHAWNTLVETIAGVAAPSRYSALSVVSQVVSLAAVEAVEDERVATGIGELDRVL
GGGVVKGGVVLIGGDPGIGKSTLLLQALSGMSAAHRTLYVSGEESARQIALRAHRLQLDAADLQLLAEIQLEKILATLNE
HKPFIAVIDSIQTVYSEALQSAPGSVAQVRECAAQLTRYAKQTGTVIFLVGHVTKEGALAGPRVLEHIVDTVLYFEGDTS
SAFRLVRAFKNRFGAVNELGVFAMTDKGLKGVSNPSAIFLSGHSADVPGSCVMVTQEGTRPLLVEIQALVESSPSPNPRR
LSVGLEQNRLAMLLAVLHRHAGLACYDQDVFINAVGGVRINEPAADLPLLLAIVSSFKNKAMQDKLVVFGEVGLAGEIRP
VQRGQERLKEAAKLGFTRAIVPAANKPRQAIAGMDVIAVERLQDAVAYLREQG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=75273 GZH91_RS10120 WP_147072829.1 1944238..1945599(-) (radA) [Sulfuriferula plumbiphila strain Gro7]
ATGGCTAAAGCAAAAACCCTCTATTCCTGCACCGAATGCGGCGACACTTTGAGCAAGTGGCAAGGCCAGTGCCCATCCTG
CCACGCCTGGAACACGCTGGTGGAAACCATTGCCGGGGTCGCTGCGCCGTCGCGCTACAGCGCGCTGTCGGTGGTGAGCC
AGGTGGTGTCACTGGCTGCGGTGGAAGCGGTCGAGGACGAGCGCGTCGCCACCGGCATCGGCGAGCTCGACCGGGTGCTG
GGCGGCGGGGTGGTGAAGGGCGGGGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCCACGCTGCTGTTGCAGGC
GCTGTCTGGCATGAGTGCGGCGCACAGGACGCTGTATGTGAGCGGCGAGGAATCGGCGCGGCAGATTGCCTTGCGCGCGC
ATCGCTTGCAGCTGGATGCCGCAGATCTGCAATTGCTGGCGGAAATCCAGCTGGAGAAAATTCTCGCCACGCTCAACGAG
CACAAGCCTTTCATCGCGGTAATCGATTCCATCCAGACGGTTTATTCCGAGGCGCTGCAATCCGCGCCCGGTTCGGTGGC
GCAGGTGCGCGAGTGTGCGGCGCAGTTGACGCGCTACGCCAAGCAGACCGGCACGGTGATTTTCCTGGTCGGCCACGTCA
CCAAGGAAGGCGCGCTGGCCGGGCCGCGCGTGCTGGAGCACATCGTCGATACGGTGTTGTATTTCGAGGGCGACACCAGT
TCCGCCTTCCGACTGGTGCGGGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTGGGGGTGTTCGCGATGACCGACAA
GGGGCTGAAAGGCGTATCCAACCCGTCGGCGATTTTCCTGTCCGGGCATAGTGCCGACGTCCCCGGATCGTGCGTGATGG
TGACCCAGGAGGGCACGCGCCCGTTGCTGGTGGAGATTCAGGCGCTGGTGGAGTCGTCGCCGTCGCCCAATCCGCGCAGG
CTCAGTGTCGGCCTGGAGCAGAACCGTCTGGCGATGCTGCTGGCAGTGCTGCACCGCCATGCCGGCCTGGCGTGTTATGA
CCAGGACGTGTTCATCAACGCGGTGGGCGGGGTGCGCATCAACGAGCCGGCGGCGGATTTGCCGTTGCTGCTGGCGATAG
TTTCATCATTCAAAAACAAGGCAATGCAGGATAAACTTGTAGTGTTTGGCGAGGTTGGTCTGGCAGGGGAAATCCGTCCG
GTGCAGCGTGGCCAGGAGCGCCTGAAAGAGGCCGCCAAGCTGGGCTTCACCCGCGCCATCGTGCCTGCTGCCAACAAGCC
GCGCCAGGCGATTGCGGGGATGGACGTCATTGCAGTGGAACGCCTGCAGGATGCGGTGGCGTACCTGCGCGAGCAGGGGT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(62-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(342-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A512L810

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

100

0.503
  radA Streptococcus mitis SK321

47.754

93.377

0.446
  radA Streptococcus pneumoniae Rx1

47.754

93.377

0.446
  radA Streptococcus pneumoniae D39

47.754

93.377

0.446
  radA Streptococcus pneumoniae R6

47.754

93.377

0.446
  radA Streptococcus pneumoniae TIGR4

47.754

93.377

0.446
  radA Streptococcus mitis NCTC 12261

47.518

93.377

0.444

Multiple sequence alignment