Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OMD35_RS14620 Genome accession   NZ_CP110145
Coordinates   2923357..2923953 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain YZ22CK024     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2918357..2928953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMD35_RS14605 helD 2918565..2920619 (-) 2055 WP_009485779.1 DNA helicase IV -
  OMD35_RS14610 - 2920744..2921190 (+) 447 WP_002898425.1 YccF domain-containing protein -
  OMD35_RS14615 yccS 2921208..2923343 (+) 2136 WP_002898422.1 YccS family putative transporter -
  OMD35_RS14620 sxy/tfoX 2923357..2923953 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  OMD35_RS14625 sulA 2924302..2924811 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  OMD35_RS14630 ompA 2925164..2926234 (+) 1071 WP_002898408.1 porin OmpA -
  OMD35_RS14635 matP 2926366..2926818 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  OMD35_RS14640 - 2927004..2928761 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=752721 OMD35_RS14620 WP_004179217.1 2923357..2923953(-) (sxy/tfoX) [Klebsiella pneumoniae strain YZ22CK024]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=752721 OMD35_RS14620 WP_004179217.1 2923357..2923953(-) (sxy/tfoX) [Klebsiella pneumoniae strain YZ22CK024]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51