Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   A6U93_RS01055 Genome accession   NZ_CP123838
Coordinates   197580..197945 (+) Length   121 a.a.
NCBI ID   WP_003493773.1    Uniprot ID   A0A1S9E560
Organism   Agrobacterium tumefaciens strain 15-1187-1-2a     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 192580..202945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6U93_RS01040 (A6U93_01040) - 194795..195172 (-) 378 WP_003514995.1 hypothetical protein -
  A6U93_RS01045 (A6U93_01045) - 195689..197284 (+) 1596 WP_233283633.1 globin-coupled sensor protein -
  A6U93_RS01050 (A6U93_01050) - 197284..197583 (+) 300 WP_013635450.1 STAS domain-containing protein -
  A6U93_RS01055 (A6U93_01055) scnR 197580..197945 (+) 366 WP_003493773.1 chemotaxis response regulator CheY1 Regulator
  A6U93_RS01060 (A6U93_01060) - 197962..200229 (+) 2268 WP_065658356.1 chemotaxis protein CheA -
  A6U93_RS01065 (A6U93_01065) cheR 200243..201151 (+) 909 WP_065658355.1 protein-glutamate O-methyltransferase CheR -
  A6U93_RS01070 (A6U93_01070) cheB 201148..202203 (+) 1056 WP_013635453.1 protein-glutamate O-methylesterase CheB -
  A6U93_RS01075 (A6U93_01075) cheY2 202203..202592 (+) 390 WP_003515008.1 chemotaxis response regulator CheY2 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13482.48 Da        Isoelectric Point: 4.9534

>NTDB_id=752717 A6U93_RS01055 WP_003493773.1 197580..197945(+) (scnR) [Agrobacterium tumefaciens strain 15-1187-1-2a]
MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPIL
VLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERVTA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=752717 A6U93_RS01055 WP_003493773.1 197580..197945(+) (scnR) [Agrobacterium tumefaciens strain 15-1187-1-2a]
GTGAAGAAAAAAGTTCTTACCGTGGATGATTCCAGAACGATCAGGAACATGCTCCTGGTCACGCTCAACAATGCCGGTTT
CGAGACAATTCAGGCCGAAGACGGCATTGAGGGTCTCGAAGTGCTGGAGCAGAGCAACCCCGACGTCATCGTGACCGATA
TCAACATGCCCCGTCTTGACGGTTTCGGCTTCATCGAGGGTGTGCGTCGCAACGAGAAGTACCGGGCCATACCGATCCTC
GTTCTGACGACCGAAAGCGACGCAGAGAAGAAGAACCGCGCCCGTCAGGCCGGTGCGACCGGCTGGATCGTCAAGCCGTT
CGATCCTGCGAAGCTCATCGATGCCATTGAACGCGTAACTGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9E560

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.286

92.562

0.364