Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OMD37_RS17525 Genome accession   NZ_CP110142
Coordinates   3478956..3479552 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain SBH193     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3473956..3484552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMD37_RS17510 helD 3474164..3476218 (-) 2055 WP_014907883.1 DNA helicase IV -
  OMD37_RS17515 - 3476343..3476789 (+) 447 WP_002898425.1 YccF domain-containing protein -
  OMD37_RS17520 yccS 3476807..3478942 (+) 2136 WP_021465041.1 YccS family putative transporter -
  OMD37_RS17525 sxy/tfoX 3478956..3479552 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  OMD37_RS17530 sulA 3479901..3480410 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  OMD37_RS17535 ompA 3480763..3481833 (+) 1071 WP_002898408.1 porin OmpA -
  OMD37_RS17540 matP 3481965..3482417 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  OMD37_RS17545 - 3482603..3484360 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=752700 OMD37_RS17525 WP_004179217.1 3478956..3479552(-) (sxy/tfoX) [Klebsiella pneumoniae strain SBH193]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=752700 OMD37_RS17525 WP_004179217.1 3478956..3479552(-) (sxy/tfoX) [Klebsiella pneumoniae strain SBH193]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51